Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp40Q8BWR4 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp40Q8BWR4 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp40Q8BWR4 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC23.87■■□□□ 1.41
Usp40Q8BWR4 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Usp40Q8BWR4 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp40Q8BWR4 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC23.87■■□□□ 1.41
Usp40Q8BWR4 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp40Q8BWR4 AC154855.1-201ENSMUST00000227353 1458 ntBASIC23.87■■□□□ 1.41
Usp40Q8BWR4 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp40Q8BWR4 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Usp40Q8BWR4 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp40Q8BWR4 Gm27704-201ENSMUST00000185094 107 ntBASIC23.86■■□□□ 1.41
Usp40Q8BWR4 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp40Q8BWR4 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp40Q8BWR4 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp40Q8BWR4 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp40Q8BWR4 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Usp40Q8BWR4 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Gm17808-201ENSMUST00000200859 894 ntBASIC23.85■■□□□ 1.41
Usp40Q8BWR4 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp40Q8BWR4 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp40Q8BWR4 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Gm9103-201ENSMUST00000119371 405 ntBASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp40Q8BWR4 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Usp40Q8BWR4 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Usp40Q8BWR4 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Usp40Q8BWR4 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC23.82■■□□□ 1.4
Usp40Q8BWR4 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Usp40Q8BWR4 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Usp40Q8BWR4 AC125311.2-201ENSMUST00000227477 1940 ntBASIC23.82■■□□□ 1.4
Usp40Q8BWR4 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Usp40Q8BWR4 Gm5953-201ENSMUST00000220644 2616 ntBASIC23.81■■□□□ 1.4
Usp40Q8BWR4 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp40Q8BWR4 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Usp40Q8BWR4 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp40Q8BWR4 Gm18958-201ENSMUST00000174258 762 ntBASIC23.81■■□□□ 1.4
Usp40Q8BWR4 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Usp40Q8BWR4 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp40Q8BWR4 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
Usp40Q8BWR4 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
Usp40Q8BWR4 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp40Q8BWR4 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Usp40Q8BWR4 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Usp40Q8BWR4 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Usp40Q8BWR4 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Usp40Q8BWR4 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
Usp40Q8BWR4 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Usp40Q8BWR4 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Usp40Q8BWR4 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Usp40Q8BWR4 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
Usp40Q8BWR4 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Usp40Q8BWR4 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms