Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.08■□□□□ 0.49
Ccdc40Q8BI79 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Gm12896-201ENSMUST00000118430 226 ntBASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Gm12441-201ENSMUST00000121806 588 ntBASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc40Q8BI79 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Mir2861-201ENSMUST00000175539 82 ntBASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc40Q8BI79 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Gm29791-202ENSMUST00000207888 369 ntBASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Hivep3-201ENSMUST00000084306 2973 ntBASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc40Q8BI79 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Idnk-204ENSMUST00000226010 1898 ntBASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Mir6349-201ENSMUST00000184059 97 ntBASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Gm10138-203ENSMUST00000206952 366 ntBASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms