Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clrn3Q8BHH8 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Zcchc6-207ENSMUST00000225576 2499 ntBASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clrn3Q8BHH8 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clrn3Q8BHH8 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Nrn1-203ENSMUST00000223611 1443 ntBASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Clrn3Q8BHH8 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Gm5643-201ENSMUST00000117081 966 ntBASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clrn3Q8BHH8 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clrn3Q8BHH8 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clrn3Q8BHH8 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clrn3Q8BHH8 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clrn3Q8BHH8 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Clrn3Q8BHH8 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms