Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim56Q80VI1 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Gm9731-201ENSMUST00000209480 747 ntBASIC20.5■□□□□ 0.87
Trim56Q80VI1 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Gm37519-201ENSMUST00000191687 2210 ntBASIC20.5■□□□□ 0.87
Trim56Q80VI1 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.5■□□□□ 0.87
Trim56Q80VI1 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Gm6433-201ENSMUST00000118634 875 ntBASIC20.49■□□□□ 0.87
Trim56Q80VI1 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Gm17661-201ENSMUST00000170317 270 ntBASIC20.49■□□□□ 0.87
Trim56Q80VI1 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Gm27463-201ENSMUST00000183569 57 ntBASIC20.49■□□□□ 0.87
Trim56Q80VI1 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Gm8969-201ENSMUST00000199694 526 ntBASIC20.49■□□□□ 0.87
Trim56Q80VI1 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Gm9987-201ENSMUST00000069768 567 ntBASIC20.49■□□□□ 0.87
Trim56Q80VI1 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim56Q80VI1 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.48■□□□□ 0.87
Trim56Q80VI1 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim56Q80VI1 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
Trim56Q80VI1 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Il3ra-202ENSMUST00000223589 738 ntBASIC20.46■□□□□ 0.87
Trim56Q80VI1 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim56Q80VI1 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms