Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Rnf220Q6PDX6 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rnf220Q6PDX6 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rnf220Q6PDX6 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Gm14281-201ENSMUST00000121700 1294 ntBASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Gm45417-201ENSMUST00000209533 758 ntBASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Gm40848-201ENSMUST00000221998 324 ntBASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.47■□□□□ 0.23
Rnf220Q6PDX6 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rnf220Q6PDX6 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Rnf220Q6PDX6 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Rnf220Q6PDX6 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rnf220Q6PDX6 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Gm43017-201ENSMUST00000198296 752 ntBASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Rnf220Q6PDX6 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Cdc34b-202ENSMUST00000188741 1252 ntBASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Rnf220Q6PDX6 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms