Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.45■□□□□ 0.7
Usp49Q6P9L4 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Gm15378-201ENSMUST00000121894 207 ntBASIC19.44■□□□□ 0.7
Usp49Q6P9L4 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Gm20760-201ENSMUST00000179197 648 ntBASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Gm4974-201ENSMUST00000209974 875 ntBASIC19.44■□□□□ 0.7
Usp49Q6P9L4 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp49Q6P9L4 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Gm22240-201ENSMUST00000175225 82 ntBASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp49Q6P9L4 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Gm13168-201ENSMUST00000121771 632 ntBASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp49Q6P9L4 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
Usp49Q6P9L4 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp49Q6P9L4 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp49Q6P9L4 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp49Q6P9L4 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp49Q6P9L4 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Usp49Q6P9L4 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Usp49Q6P9L4 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Usp49Q6P9L4 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp49Q6P9L4 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp49Q6P9L4 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp49Q6P9L4 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC19.39■□□□□ 0.69
Usp49Q6P9L4 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC19.39■□□□□ 0.69
Usp49Q6P9L4 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp49Q6P9L4 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms