Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
ClpbQ60649 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
ClpbQ60649 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC16.65■□□□□ 0.26
ClpbQ60649 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
ClpbQ60649 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ClpbQ60649 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.64■□□□□ 0.26
ClpbQ60649 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.26
ClpbQ60649 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
ClpbQ60649 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
ClpbQ60649 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC16.64■□□□□ 0.25
ClpbQ60649 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC16.64■□□□□ 0.25
ClpbQ60649 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC16.64■□□□□ 0.25
ClpbQ60649 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
ClpbQ60649 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ClpbQ60649 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
ClpbQ60649 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC16.63■□□□□ 0.25
ClpbQ60649 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
ClpbQ60649 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC16.63■□□□□ 0.25
ClpbQ60649 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
ClpbQ60649 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Gm43183-201ENSMUST00000200632 547 ntBASIC16.63■□□□□ 0.25
ClpbQ60649 Gm42545-201ENSMUST00000202755 922 ntBASIC16.63■□□□□ 0.25
ClpbQ60649 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.63■□□□□ 0.25
ClpbQ60649 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
ClpbQ60649 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
ClpbQ60649 AC124581.1-201ENSMUST00000225416 1399 ntBASIC16.63■□□□□ 0.25
ClpbQ60649 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ClpbQ60649 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC16.62■□□□□ 0.25
ClpbQ60649 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC16.62■□□□□ 0.25
ClpbQ60649 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
ClpbQ60649 Gm12382-201ENSMUST00000122005 922 ntBASIC16.62■□□□□ 0.25
ClpbQ60649 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC16.62■□□□□ 0.25
ClpbQ60649 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.62■□□□□ 0.25
ClpbQ60649 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
ClpbQ60649 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC16.62■□□□□ 0.25
ClpbQ60649 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
ClpbQ60649 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.62■□□□□ 0.25
ClpbQ60649 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Gm43294-201ENSMUST00000202850 2490 ntBASIC16.62■□□□□ 0.25
ClpbQ60649 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ClpbQ60649 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Mir6982-201ENSMUST00000184354 68 ntBASIC16.61■□□□□ 0.25
ClpbQ60649 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
ClpbQ60649 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.61■□□□□ 0.25
ClpbQ60649 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ClpbQ60649 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 81.4 ms