Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Msx3P70354 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Msx3P70354 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Msx3P70354 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Msx3P70354 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Msx3P70354 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Msx3P70354 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Msx3P70354 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Msx3P70354 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Msx3P70354 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.86■□□□□ 0.45
Msx3P70354 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.86■□□□□ 0.45
Msx3P70354 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.86■□□□□ 0.45
Msx3P70354 Trmt13-210ENSMUST00000198454 880 ntBASIC17.86■□□□□ 0.45
Msx3P70354 Gm42545-201ENSMUST00000202755 922 ntBASIC17.86■□□□□ 0.45
Msx3P70354 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Msx3P70354 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC17.86■□□□□ 0.45
Msx3P70354 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx3P70354 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Msx3P70354 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Msx3P70354 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Msx3P70354 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC17.85■□□□□ 0.45
Msx3P70354 Gm12382-201ENSMUST00000122005 922 ntBASIC17.85■□□□□ 0.45
Msx3P70354 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.85■□□□□ 0.45
Msx3P70354 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Msx3P70354 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.85■□□□□ 0.45
Msx3P70354 Gm37856-201ENSMUST00000191634 999 ntBASIC17.85■□□□□ 0.45
Msx3P70354 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.85■□□□□ 0.45
Msx3P70354 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.85■□□□□ 0.45
Msx3P70354 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.85■□□□□ 0.45
Msx3P70354 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx3P70354 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.84■□□□□ 0.45
Msx3P70354 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Msx3P70354 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.84■□□□□ 0.45
Msx3P70354 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Msx3P70354 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Msx3P70354 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx3P70354 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx3P70354 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
Msx3P70354 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx3P70354 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.84■□□□□ 0.45
Msx3P70354 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx3P70354 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.84■□□□□ 0.45
Msx3P70354 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17.84■□□□□ 0.45
Msx3P70354 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx3P70354 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Msx3P70354 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.84■□□□□ 0.45
Msx3P70354 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
Msx3P70354 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx3P70354 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.83■□□□□ 0.45
Msx3P70354 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
Msx3P70354 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
Msx3P70354 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx3P70354 Gm12527-201ENSMUST00000117967 564 ntBASIC17.83■□□□□ 0.44
Msx3P70354 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.83■□□□□ 0.44
Msx3P70354 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msx3P70354 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Msx3P70354 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Msx3P70354 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Msx3P70354 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC17.82■□□□□ 0.44
Msx3P70354 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.82■□□□□ 0.44
Msx3P70354 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msx3P70354 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.82■□□□□ 0.44
Msx3P70354 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Msx3P70354 Gm37292-201ENSMUST00000192062 758 ntBASIC17.82■□□□□ 0.44
Msx3P70354 Gm4974-201ENSMUST00000209974 875 ntBASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms