Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 AC122351.1-201ENSMUST00000220467 126 ntBASIC19.76■□□□□ 0.75
Col2a1P28481 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.76■□□□□ 0.75
Col2a1P28481 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col2a1P28481 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col2a1P28481 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col2a1P28481 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col2a1P28481 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col2a1P28481 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.75■□□□□ 0.75
Col2a1P28481 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col2a1P28481 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC19.75■□□□□ 0.75
Col2a1P28481 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC19.75■□□□□ 0.75
Col2a1P28481 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Col2a1P28481 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Col2a1P28481 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col2a1P28481 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col2a1P28481 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Col2a1P28481 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Col2a1P28481 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col2a1P28481 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC19.73■□□□□ 0.75
Col2a1P28481 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Gm6190-201ENSMUST00000220683 1374 ntBASIC19.73■□□□□ 0.75
Col2a1P28481 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC19.73■□□□□ 0.75
Col2a1P28481 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC19.73■□□□□ 0.75
Col2a1P28481 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col2a1P28481 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Col2a1P28481 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.72■□□□□ 0.75
Col2a1P28481 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Gm18115-201ENSMUST00000221209 621 ntBASIC19.72■□□□□ 0.75
Col2a1P28481 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col2a1P28481 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col2a1P28481 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col2a1P28481 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col2a1P28481 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col2a1P28481 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC19.71■□□□□ 0.75
Col2a1P28481 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Col2a1P28481 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Col2a1P28481 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col2a1P28481 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC19.71■□□□□ 0.75
Col2a1P28481 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
Col2a1P28481 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col2a1P28481 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col2a1P28481 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col2a1P28481 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.74
Col2a1P28481 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC19.71■□□□□ 0.74
Col2a1P28481 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Col2a1P28481 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col2a1P28481 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Col2a1P28481 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.69■□□□□ 0.74
Col2a1P28481 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Col2a1P28481 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Gm17807-201ENSMUST00000186869 298 ntBASIC19.69■□□□□ 0.74
Col2a1P28481 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms