Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Mir2861-201ENSMUST00000175539 82 ntBASIC18.74■□□□□ 0.59
Vti1aO89116 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.74■□□□□ 0.59
Vti1aO89116 Gm8969-201ENSMUST00000199694 526 ntBASIC18.74■□□□□ 0.59
Vti1aO89116 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Vti1aO89116 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Vti1aO89116 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
Vti1aO89116 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.73■□□□□ 0.59
Vti1aO89116 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Vti1aO89116 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.72■□□□□ 0.59
Vti1aO89116 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.72■□□□□ 0.59
Vti1aO89116 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Vti1aO89116 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 Gm10819-201ENSMUST00000099988 561 ntBASIC18.72■□□□□ 0.59
Vti1aO89116 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vti1aO89116 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vti1aO89116 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vti1aO89116 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vti1aO89116 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Vti1aO89116 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vti1aO89116 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vti1aO89116 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.71■□□□□ 0.59
Vti1aO89116 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.71■□□□□ 0.59
Vti1aO89116 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Vti1aO89116 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vti1aO89116 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vti1aO89116 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.71■□□□□ 0.59
Vti1aO89116 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vti1aO89116 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Vti1aO89116 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Vti1aO89116 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Vti1aO89116 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC18.7■□□□□ 0.58
Vti1aO89116 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Vti1aO89116 Gm2274-201ENSMUST00000184539 609 ntBASIC18.7■□□□□ 0.58
Vti1aO89116 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Vti1aO89116 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.7■□□□□ 0.58
Vti1aO89116 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Vti1aO89116 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Vti1aO89116 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Vti1aO89116 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Vti1aO89116 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.69■□□□□ 0.58
Vti1aO89116 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.69■□□□□ 0.58
Vti1aO89116 Gm23634-201ENSMUST00000175071 91 ntBASIC18.69■□□□□ 0.58
Vti1aO89116 Mir5130-201ENSMUST00000175160 84 ntBASIC18.69■□□□□ 0.58
Vti1aO89116 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
Vti1aO89116 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.69■□□□□ 0.58
Vti1aO89116 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.69■□□□□ 0.58
Vti1aO89116 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Vti1aO89116 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vti1aO89116 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vti1aO89116 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Vti1aO89116 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vti1aO89116 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Vti1aO89116 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vti1aO89116 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vti1aO89116 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms