Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Gm27011-201ENSMUST00000182352 972 ntBASIC15.28■□□□□ 0.04
Trav13d-3J3QMG8 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav13d-3J3QMG8 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC15.28■□□□□ 0.04
Trav13d-3J3QMG8 Gm19721-201ENSMUST00000195284 1764 ntBASIC15.28■□□□□ 0.04
Trav13d-3J3QMG8 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav13d-3J3QMG8 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav13d-3J3QMG8 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav13d-3J3QMG8 CT010444.2-201ENSMUST00000217877 1629 ntBASIC15.28■□□□□ 0.04
Trav13d-3J3QMG8 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC15.27■□□□□ 0.04
Trav13d-3J3QMG8 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trav13d-3J3QMG8 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Trav13d-3J3QMG8 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav13d-3J3QMG8 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav13d-3J3QMG8 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC15.27■□□□□ 0.04
Trav13d-3J3QMG8 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav13d-3J3QMG8 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trav13d-3J3QMG8 Gm8520-201ENSMUST00000186517 868 ntBASIC15.27■□□□□ 0.04
Trav13d-3J3QMG8 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav13d-3J3QMG8 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trav13d-3J3QMG8 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav13d-3J3QMG8 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav13d-3J3QMG8 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trav13d-3J3QMG8 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav13d-3J3QMG8 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav13d-3J3QMG8 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trav13d-3J3QMG8 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav13d-3J3QMG8 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav13d-3J3QMG8 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav13d-3J3QMG8 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav13d-3J3QMG8 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
Trav13d-3J3QMG8 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Gm5898-201ENSMUST00000121016 2071 ntBASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Gm9694-201ENSMUST00000193347 1189 ntBASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trav13d-3J3QMG8 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms