Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a3E9PWQ3 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Col6a3E9PWQ3 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC17.46■□□□□ 0.39
Col6a3E9PWQ3 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a3E9PWQ3 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a3E9PWQ3 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Gm5626-201ENSMUST00000222151 1058 ntBASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a3E9PWQ3 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a3E9PWQ3 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a3E9PWQ3 Gm11025-201ENSMUST00000140773 466 ntBASIC17.44■□□□□ 0.38
Col6a3E9PWQ3 Mir6977-201ENSMUST00000184960 64 ntBASIC17.44■□□□□ 0.38
Col6a3E9PWQ3 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a3E9PWQ3 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a3E9PWQ3 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a3E9PWQ3 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Gm4913-201ENSMUST00000117075 1290 ntBASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col6a3E9PWQ3 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.4■□□□□ 0.38
Col6a3E9PWQ3 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Col6a3E9PWQ3 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Col6a3E9PWQ3 Gm25990-201ENSMUST00000102440 86 ntBASIC17.39■□□□□ 0.38
Col6a3E9PWQ3 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC17.39■□□□□ 0.38
Col6a3E9PWQ3 Gm6089-201ENSMUST00000197666 938 ntBASIC17.39■□□□□ 0.38
Col6a3E9PWQ3 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms