Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Aph1c-201ENSMUST00000057261 715 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm24621-201ENSMUST00000082679 140 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Tnpo1-202ENSMUST00000109401 8453 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Zfp287-206ENSMUST00000185656 3370 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Kif18a-201ENSMUST00000028527 3369 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Il22ra2-201ENSMUST00000036564 2498 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 CT009754.3-201ENSMUST00000220739 3661 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 AC127281.1-201ENSMUST00000221075 3667 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm17969-201ENSMUST00000185706 2557 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm43831-201ENSMUST00000200461 2598 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 CT009510.2-203ENSMUST00000226704 2136 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm5832-201ENSMUST00000121704 1582 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Maoa-201ENSMUST00000026013 4167 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Ros1-201ENSMUST00000020045 7401 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Vmn1r27-202ENSMUST00000226666 2969 ntAPPRIS ALT2 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Rorb-201ENSMUST00000040153 8759 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Heph-202ENSMUST00000079322 3904 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Oog3-201ENSMUST00000050933 1865 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm45644-201ENSMUST00000210255 2740 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Olfr432-202ENSMUST00000213211 4435 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Olfr1176-202ENSMUST00000213778 2823 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 AC113059.2-201ENSMUST00000213462 3016 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm37192-201ENSMUST00000194479 1348 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm32592-201ENSMUST00000205146 3124 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Rnf40Q3U319 AC158232.1-202ENSMUST00000218352 3343 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Utp14b-201ENSMUST00000053760 7393 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Vav3-202ENSMUST00000106576 3123 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Igkv8-24-201ENSMUST00000103384 365 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm25396-201ENSMUST00000103981 133 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm11576-201ENSMUST00000117433 417 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm13735-201ENSMUST00000120217 670 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm14732-201ENSMUST00000121372 545 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm15237-201ENSMUST00000122104 469 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 4933431E20Rik-206ENSMUST00000138472 483 ntTSL 5 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm12414-201ENSMUST00000150794 494 ntTSL 5 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm15401-203ENSMUST00000156497 378 ntTSL 3 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm23537-201ENSMUST00000157536 330 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm25180-201ENSMUST00000157746 115 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm16028-201ENSMUST00000162347 890 ntTSL 5 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm16232-201ENSMUST00000162856 167 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Vmn1r-ps40-201ENSMUST00000172862 343 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 1110046J04Rik-203ENSMUST00000181800 777 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm27026-201ENSMUST00000183003 892 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Mir6241-201ENSMUST00000184225 103 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Snhg14-205ENSMUST00000186345 456 ntTSL 5 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm29124-201ENSMUST00000186576 452 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Tmem167-ps3-201ENSMUST00000186718 178 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 1700054A03Rik-201ENSMUST00000187368 780 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm37375-201ENSMUST00000193859 387 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm37385-201ENSMUST00000195223 387 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm6059-201ENSMUST00000196903 340 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm43449-201ENSMUST00000202955 371 ntTSL 3 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm45127-201ENSMUST00000205984 1015 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm4756-203ENSMUST00000208307 798 ntTSL 3 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 AC160123.1-201ENSMUST00000213443 570 ntTSL 5 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Olfr1119-ps1-201ENSMUST00000215282 634 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 AC153845.2-203ENSMUST00000215889 617 ntTSL 3 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 AC164561.1-201ENSMUST00000220414 115 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Gm9874-202ENSMUST00000194957 1464 ntBASIC6.25□□□□□ -1.41
Rnf40Q3U319 Olfr1357-202ENSMUST00000203305 2286 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Tet1-201ENSMUST00000050826 13986 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
Rnf40Q3U319 A730081D07Rik-201ENSMUST00000153685 1804 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Ptprj-202ENSMUST00000111495 4197 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
Rnf40Q3U319 Glb1l3-201ENSMUST00000034448 2468 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Mboat2-204ENSMUST00000221952 6792 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Tmprss15-201ENSMUST00000023566 4177 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Stx19-201ENSMUST00000055557 2812 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm12794-201ENSMUST00000052027 1452 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Ereg-201ENSMUST00000031324 4128 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Olfr1270-203ENSMUST00000215578 4982 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm5746-201ENSMUST00000183550 2200 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Olfr55-204ENSMUST00000216633 4758 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Igkv8-19-201ENSMUST00000103389 305 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 n-R5s202-201ENSMUST00000104517 114 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm11271-201ENSMUST00000116054 440 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm11633-201ENSMUST00000118176 444 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm14614-201ENSMUST00000119873 384 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm3810-201ENSMUST00000122413 476 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm13028-201ENSMUST00000128563 277 ntTSL 3 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm12160-201ENSMUST00000146372 342 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm14097-201ENSMUST00000147868 470 ntTSL 3 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm13598-201ENSMUST00000147939 625 ntTSL 5 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm26186-201ENSMUST00000157689 125 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Tcrg-C3-201ENSMUST00000164407 519 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm23631-201ENSMUST00000175291 123 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm20830-201ENSMUST00000178016 684 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm20812-201ENSMUST00000179220 684 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Mir6987-201ENSMUST00000184789 73 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm10421-202ENSMUST00000186114 132 ntTSL 3 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm18875-201ENSMUST00000188563 882 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm29044-201ENSMUST00000188916 283 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm8539-201ENSMUST00000199822 501 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm33962-202ENSMUST00000205195 630 ntTSL 5 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 4930435C17Rik-202ENSMUST00000210759 974 ntTSL 5 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 AC126267.1-201ENSMUST00000214282 284 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm2645-201ENSMUST00000223516 547 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 AC241593.1-201ENSMUST00000224768 397 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 AC123656.1-201ENSMUST00000227121 581 ntBASIC6.24□□□□□ -1.41
Rnf40Q3U319 Olfr453-201ENSMUST00000053647 954 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
Rnf40Q3U319 Gm10108-201ENSMUST00000078246 319 ntBASIC6.24□□□□□ -1.41
Retrieved 100 of 76,532 protein–RNA pairs in 97.4 ms