Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Rpl31-ps13-201ENSMUST00000060994 378 ntBASIC6.28□□□□□ -1.4
Rnf40Q3U319 Olfr1202-201ENSMUST00000072057 930 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
Rnf40Q3U319 2610044O15Rik8-201ENSMUST00000079272 264 ntTSL 5 BASIC6.28□□□□□ -1.4
Rnf40Q3U319 Gm25815-201ENSMUST00000082755 107 ntBASIC6.28□□□□□ -1.4
Rnf40Q3U319 Rpl31-ps1-201ENSMUST00000085128 378 ntBASIC6.28□□□□□ -1.4
Rnf40Q3U319 Rpl31-ps9-201ENSMUST00000086596 378 ntBASIC6.28□□□□□ -1.4
Rnf40Q3U319 Rpl31-ps17-201ENSMUST00000097040 378 ntBASIC6.28□□□□□ -1.4
Rnf40Q3U319 Olfr1353-203ENSMUST00000205193 1924 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
Rnf40Q3U319 Gm42607-201ENSMUST00000200221 3393 ntBASIC6.28□□□□□ -1.4
Rnf40Q3U319 Vmn1r45-204ENSMUST00000227426 3205 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
Rnf40Q3U319 Tmem209-204ENSMUST00000115160 3485 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
Rnf40Q3U319 Cfap70-201ENSMUST00000022348 3469 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
Rnf40Q3U319 Zfp934-203ENSMUST00000220648 2439 ntTSL 5 BASIC6.28□□□□□ -1.4
Rnf40Q3U319 Olfr31-203ENSMUST00000217035 4126 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
Rnf40Q3U319 AI987944-201ENSMUST00000071804 2671 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
Rnf40Q3U319 Map7d3-201ENSMUST00000114766 2891 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
Rnf40Q3U319 Il1rapl1-203ENSMUST00000113966 9133 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
Rnf40Q3U319 Sspn-202ENSMUST00000111701 4512 ntTSL 3 BASIC6.27□□□□□ -1.4
Rnf40Q3U319 Plcb4-201ENSMUST00000035646 3635 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.4
Rnf40Q3U319 Zfp811-202ENSMUST00000200914 3458 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Prom1-203ENSMUST00000087441 3664 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Parp4-201ENSMUST00000161553 6387 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Slc44a1-205ENSMUST00000107651 4382 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm22781-201ENSMUST00000104083 137 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm5937-201ENSMUST00000119715 643 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Olfr1035-ps1-201ENSMUST00000120109 966 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Rps12-ps1-201ENSMUST00000121980 401 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm15164-201ENSMUST00000122203 271 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm16347-201ENSMUST00000131707 622 ntTSL 2 BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm12590-201ENSMUST00000134226 404 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm26279-201ENSMUST00000157095 102 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm25714-201ENSMUST00000158626 296 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm16326-201ENSMUST00000162843 414 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Pkib-211ENSMUST00000177473 525 ntAPPRIS P1 TSL 3 BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm16794-201ENSMUST00000180727 2100 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm28769-201ENSMUST00000190176 615 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Ly6e-215ENSMUST00000191436 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm37725-201ENSMUST00000193965 2125 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm5050-201ENSMUST00000197164 775 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Igkv13-78-1-201ENSMUST00000199298 200 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm18593-201ENSMUST00000200754 1139 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm9357-201ENSMUST00000207138 805 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Cd209d-202ENSMUST00000209176 672 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm20039-201ENSMUST00000210329 394 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 AC153954.2-201ENSMUST00000213811 287 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm29884-201ENSMUST00000218403 453 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 AC113204.1-203ENSMUST00000219475 375 ntTSL 3 BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm8275-201ENSMUST00000219732 424 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 AC130829.3-201ENSMUST00000222735 154 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 AC158525.1-201ENSMUST00000223806 576 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 CT025686.1-201ENSMUST00000227592 438 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm14851-201ENSMUST00000077452 351 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm5670-201ENSMUST00000093546 372 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 9230109A22Rik-202ENSMUST00000228644 1853 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm37255-201ENSMUST00000193302 3060 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Dock7-205ENSMUST00000127417 6796 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Tnfrsf26-201ENSMUST00000055723 3107 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm44045-201ENSMUST00000204906 2520 ntBASIC6.27□□□□□ -1.41
Rnf40Q3U319 Myo1b-204ENSMUST00000114541 4616 ntTSL 5 BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Olfr1252-202ENSMUST00000213196 3331 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Lrrtm4-203ENSMUST00000126399 3050 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Tmem45a-201ENSMUST00000023435 2701 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
Rnf40Q3U319 Gm42397-201ENSMUST00000207472 2002 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Slc28a2-201ENSMUST00000028652 3852 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Olfr1016-202ENSMUST00000216425 2698 ntAPPRIS P1 TSL 3 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Map9-206ENSMUST00000195640 6162 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 S100pbp-201ENSMUST00000049081 2769 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm2539-201ENSMUST00000180720 2411 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm37551-201ENSMUST00000195556 2861 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Homer2-202ENSMUST00000098326 10982 ntTSL 5 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm43857-201ENSMUST00000200343 3079 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Vmn1r63-201ENSMUST00000075085 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm23142-201ENSMUST00000101848 105 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm26240-201ENSMUST00000101893 105 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Mir503-201ENSMUST00000102168 71 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm26419-201ENSMUST00000104272 133 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm11698-201ENSMUST00000117948 455 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm12535-201ENSMUST00000121025 484 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm5123-201ENSMUST00000121905 837 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm5755-201ENSMUST00000152394 837 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm23224-201ENSMUST00000158122 271 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm23762-201ENSMUST00000158348 106 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm25834-201ENSMUST00000158916 101 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Lce6a-202ENSMUST00000170676 485 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm17183-201ENSMUST00000171170 493 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm27421-201ENSMUST00000184729 167 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 1700010I02Rik-202ENSMUST00000188525 430 ntTSL 3 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Scgb3a2-203ENSMUST00000189750 578 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm3143-201ENSMUST00000196308 580 ntTSL 3 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm6260-202ENSMUST00000197170 921 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm29736-201ENSMUST00000198189 385 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm44076-201ENSMUST00000203072 520 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm44730-201ENSMUST00000205902 716 ntTSL 3 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 Gm6112-201ENSMUST00000208037 629 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 AC188459.1-201ENSMUST00000216651 300 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 Zp4-ps-202ENSMUST00000222293 922 ntTSL 3 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 AC122298.1-201ENSMUST00000222574 165 ntTSL 5 BASIC6.26□□□□□ -1.41
Rnf40Q3U319 AC091783.4-201ENSMUST00000224940 611 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 AC124729.1-201ENSMUST00000225327 976 ntBASIC6.26□□□□□ -1.41
Rnf40Q3U319 1700007K09Rik-201ENSMUST00000033146 360 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
Retrieved 100 of 76,532 protein–RNA pairs in 97.8 ms