Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ubtfl1-203ENSMUST00000169398 4430 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm14325-203ENSMUST00000188914 1494 ntTSL 5 BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Fbxw16-201ENSMUST00000084984 1497 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Olfr133-203ENSMUST00000215078 3130 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Cypt1-202ENSMUST00000115422 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm14987-201ENSMUST00000117820 676 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm11822-201ENSMUST00000119177 415 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm11829-201ENSMUST00000121003 282 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm9225-201ENSMUST00000121921 836 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm23327-201ENSMUST00000157420 78 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm15446-203ENSMUST00000170826 192 ntTSL 5 BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Isx-202ENSMUST00000174427 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Pid1-206ENSMUST00000176822 1119 ntTSL 2 BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm20794-201ENSMUST00000177626 628 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Rpl31-ps7-201ENSMUST00000180629 379 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm26731-201ENSMUST00000180683 543 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm27492-201ENSMUST00000185194 187 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm28666-201ENSMUST00000186649 274 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 2810429I04Rik-209ENSMUST00000188642 674 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm38163-201ENSMUST00000194112 482 ntTSL 5 BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm43631-201ENSMUST00000202011 369 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 AC162387.1-201ENSMUST00000213369 213 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 AC158633.1-201ENSMUST00000219892 649 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 AC156798.1-201ENSMUST00000220508 224 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 AC159244.1-201ENSMUST00000220964 594 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Mir30b-201ENSMUST00000083542 96 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Gm45222-201ENSMUST00000207029 4307 ntBASIC5.92□□□□□ -1.46
Trim56Q80VI1 Olfr1173-201ENSMUST00000099830 2268 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Olfr1217-202ENSMUST00000213669 3839 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Zfp975-201ENSMUST00000107992 3148 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Zfp758-203ENSMUST00000121315 2860 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Vmn1r171-209ENSMUST00000228228 2863 ntAPPRIS ALT2 BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Vmn1r31-205ENSMUST00000228586 2115 ntAPPRIS P2 BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Slco1a1-202ENSMUST00000168119 3904 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
Trim56Q80VI1 Vmn2r1-201ENSMUST00000029406 2739 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Zfp280c-201ENSMUST00000072292 4045 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Zgrf1-202ENSMUST00000195955 3804 ntTSL 2 BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm5155-201ENSMUST00000072381 2841 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Postn-204ENSMUST00000117373 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm42704-201ENSMUST00000196875 1778 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Pcdh9-207ENSMUST00000195376 5096 ntTSL 5 BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Kif20b-203ENSMUST00000223907 5423 ntAPPRIS ALT2 BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gnrh1-201ENSMUST00000111095 486 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm14771-201ENSMUST00000118249 203 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm13213-201ENSMUST00000119668 474 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm26153-201ENSMUST00000157433 127 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm23965-201ENSMUST00000157969 142 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm24550-201ENSMUST00000158648 279 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Vmn2r-ps55-201ENSMUST00000173834 240 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm22584-201ENSMUST00000177935 92 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm27551-201ENSMUST00000184258 77 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 9130024F11Rik-203ENSMUST00000187858 447 ntTSL 2 BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm28957-201ENSMUST00000190174 373 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm28357-201ENSMUST00000190256 622 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 1700063A18Rik-201ENSMUST00000190901 356 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 1700031M16Rik-207ENSMUST00000191513 847 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm30043-201ENSMUST00000196689 733 ntTSL 2 BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm43406-201ENSMUST00000200356 334 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm39302-201ENSMUST00000215184 636 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm17890-201ENSMUST00000221419 757 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm7822-201ENSMUST00000222433 581 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 AC125539.2-202ENSMUST00000227983 587 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Vmn1r211-201ENSMUST00000073728 985 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Mir181a-2-201ENSMUST00000083489 76 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Zfp708-201ENSMUST00000109742 2416 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Zfp708-203ENSMUST00000190566 2406 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm10933-201ENSMUST00000221891 1861 ntBASIC5.91□□□□□ -1.46
Trim56Q80VI1 Olfr1057-202ENSMUST00000217435 3249 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Zkscan8-204ENSMUST00000224362 6954 ntAPPRIS ALT2 BASIC5.91□□□□□ -1.46
Trim56Q80VI1 Gm3526-201ENSMUST00000164544 1750 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
Trim56Q80VI1 AC121844.3-201ENSMUST00000219124 1785 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm16794-201ENSMUST00000180727 2100 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm3383-202ENSMUST00000112758 1813 ntAPPRIS P5 TSL 5 BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm3194-202ENSMUST00000180867 1813 ntAPPRIS P5 TSL 5 BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm4541-201ENSMUST00000208901 1848 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Trpc5os-202ENSMUST00000178233 3515 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm37762-201ENSMUST00000194515 3561 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm19666-201ENSMUST00000198176 1893 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Olfr461-202ENSMUST00000215009 4292 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Serpinb9b-201ENSMUST00000006392 3253 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm4064-201ENSMUST00000187482 1561 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Setd2-201ENSMUST00000153838 8350 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm12285-201ENSMUST00000117347 233 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Ttc29-203ENSMUST00000117845 650 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm13755-201ENSMUST00000118509 305 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm13804-201ENSMUST00000119552 172 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm14655-201ENSMUST00000120124 578 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm13180-201ENSMUST00000141222 440 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Trim56Q80VI1 1700061H18Rik-202ENSMUST00000147221 564 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm25334-201ENSMUST00000158036 110 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gng2-206ENSMUST00000162425 393 ntAPPRIS P1 TSL 3 BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm17669-201ENSMUST00000163749 465 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Pate1-201ENSMUST00000170021 389 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm22852-201ENSMUST00000177899 101 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 4930598A11Rik-201ENSMUST00000180742 628 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Trim56Q80VI1 4930461G14Rik-201ENSMUST00000181967 843 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm28418-201ENSMUST00000186179 423 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm28769-201ENSMUST00000190176 615 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm20056-201ENSMUST00000194813 519 ntBASIC5.9□□□□□ -1.46
Trim56Q80VI1 Gm44373-201ENSMUST00000196112 169 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 76,532 protein–RNA pairs in 91.7 ms