Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 AC165287.1-201ENSMUST00000224985 178 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 CT030705.2-201ENSMUST00000225301 556 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 AC140267.1-201ENSMUST00000226485 213 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
Rnf40Q3U319 AC167013.4-201ENSMUST00000226712 317 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 Gm26442-201ENSMUST00000082588 153 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 Olfr1145-202ENSMUST00000090707 978 ntAPPRIS P2 BASIC6.43□□□□□ -1.38
Rnf40Q3U319 Mir471-201ENSMUST00000093596 67 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 Gm43789-201ENSMUST00000199275 2472 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 Vmn1r35-205ENSMUST00000227961 1789 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 Rfx3-202ENSMUST00000165566 9146 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
Rnf40Q3U319 B3gnt5-203ENSMUST00000121344 4175 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
Rnf40Q3U319 D630030B08Rik-201ENSMUST00000202983 3479 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 Tspan7-202ENSMUST00000115526 7067 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
Rnf40Q3U319 Zranb3-201ENSMUST00000086614 4210 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
Rnf40Q3U319 Spag17-204ENSMUST00000164539 7862 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
Rnf40Q3U319 C530043A13Rik-203ENSMUST00000189247 3364 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 Gm37268-201ENSMUST00000192254 2614 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 Gm7108-201ENSMUST00000118038 3407 ntBASIC6.43□□□□□ -1.38
Rnf40Q3U319 Impact-201ENSMUST00000025290 3432 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
Rnf40Q3U319 Zfand6-201ENSMUST00000069537 1658 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Usp47-202ENSMUST00000210309 5816 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm45413-201ENSMUST00000210389 3538 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm6729-202ENSMUST00000219485 2209 ntTSL 5 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Zscan4e-201ENSMUST00000166753 1722 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Asap1-210ENSMUST00000176384 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Rabgap1-201ENSMUST00000061179 4967 ntAPPRIS P4 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Ttc39d-201ENSMUST00000053168 2022 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Evi2-202ENSMUST00000170422 3944 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 AC152944.1-201ENSMUST00000220160 3101 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gbp7-201ENSMUST00000045097 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 AC123705.3-201ENSMUST00000223531 2069 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm43663-201ENSMUST00000198643 1505 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm43374-201ENSMUST00000202498 2391 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm22439-201ENSMUST00000104048 132 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm11935-201ENSMUST00000118608 399 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm15149-201ENSMUST00000119370 360 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Rpl31-ps6-201ENSMUST00000119959 378 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm13967-201ENSMUST00000120404 380 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm13578-201ENSMUST00000120849 590 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm14841-201ENSMUST00000121067 758 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm25666-201ENSMUST00000157702 107 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Csnk2b-207ENSMUST00000174024 883 ntTSL 5 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm22308-201ENSMUST00000177609 107 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm6075-201ENSMUST00000186816 486 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm28163-201ENSMUST00000187099 325 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm29592-201ENSMUST00000189434 370 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm29140-201ENSMUST00000190187 476 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm20690-202ENSMUST00000195126 355 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm44463-201ENSMUST00000198895 137 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm5110-201ENSMUST00000203122 1063 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Rho-205ENSMUST00000203877 939 ntTSL 2 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm45666-201ENSMUST00000211474 277 ntTSL 5 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 1700026F02Rik-205ENSMUST00000212266 787 ntTSL 5 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 AC158622.1-201ENSMUST00000217107 230 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm19056-201ENSMUST00000218220 797 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 AC141425.1-201ENSMUST00000224989 265 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 AC154431.2-201ENSMUST00000225215 1055 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm26128-201ENSMUST00000083170 110 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Krtap14-201ENSMUST00000099562 216 ntTSL 5 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm7048-201ENSMUST00000199395 1891 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Mnat1-202ENSMUST00000187549 3688 ntTSL 5 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Psg28-201ENSMUST00000019291 1949 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Akap5-202ENSMUST00000154078 6685 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Akap5-201ENSMUST00000095610 6687 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm10415-201ENSMUST00000204181 2825 ntTSL 2 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Stxbp5-201ENSMUST00000038213 8825 ntAPPRIS ALT1 TSL 5 BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Pus10-203ENSMUST00000109525 3177 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Gm37880-201ENSMUST00000192216 3257 ntBASIC6.42□□□□□ -1.38
Rnf40Q3U319 Cep112os1-201ENSMUST00000137907 3005 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
Rnf40Q3U319 Vmn1r169-205ENSMUST00000228832 2749 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Klra2-201ENSMUST00000032306 1799 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Zbed6-201ENSMUST00000190574 5007 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Arhgap12-202ENSMUST00000077128 4431 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Eps15-207ENSMUST00000175776 2802 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Olfr1338-203ENSMUST00000216559 2829 ntAPPRIS ALT1 TSL 5 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gria4-204ENSMUST00000212533 5207 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm38067-201ENSMUST00000192346 1911 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Vmn1r178-203ENSMUST00000226489 2644 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Trbv4-201ENSMUST00000103265 393 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Trav10n-201ENSMUST00000103612 343 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm25916-201ENSMUST00000104263 131 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm14825-201ENSMUST00000113538 701 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm13463-201ENSMUST00000119020 233 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm9697-201ENSMUST00000147052 997 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm16155-201ENSMUST00000155180 338 ntTSL 3 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm25389-201ENSMUST00000157340 286 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm22598-201ENSMUST00000157600 127 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm24782-201ENSMUST00000157641 132 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm24422-201ENSMUST00000157800 119 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm22530-201ENSMUST00000158820 118 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm24300-201ENSMUST00000177809 109 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Spin2g-201ENSMUST00000178425 687 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm24017-201ENSMUST00000178726 109 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm21816-201ENSMUST00000179255 360 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm23952-201ENSMUST00000179380 109 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm26654-201ENSMUST00000180455 256 ntTSL 3 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Olr1-203ENSMUST00000182784 570 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Trav14-2-202ENSMUST00000184874 276 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm8241-201ENSMUST00000189286 816 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Ighv5-5-201ENSMUST00000193826 329 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 76,532 protein–RNA pairs in 77.8 ms