Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Gm10698-201ENSMUST00000182663 604 ntBASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Ddx56Q9D0R4 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx56Q9D0R4 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Gm4974-201ENSMUST00000209974 875 ntBASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ddx56Q9D0R4 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 Gm13168-201ENSMUST00000121771 632 ntBASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.27■□□□□ 0.52
Ddx56Q9D0R4 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.27■□□□□ 0.51
Ddx56Q9D0R4 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.27■□□□□ 0.51
Ddx56Q9D0R4 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ddx56Q9D0R4 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ddx56Q9D0R4 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Gm10517-202ENSMUST00000192970 758 ntBASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ddx56Q9D0R4 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms