Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp11Q99K46 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp11Q99K46 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp11Q99K46 Flg-201ENSMUST00000050758 1488 ntBASIC18.37■□□□□ 0.53
Usp11Q99K46 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp11Q99K46 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.37■□□□□ 0.53
Usp11Q99K46 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp11Q99K46 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Usp11Q99K46 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp11Q99K46 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp11Q99K46 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp11Q99K46 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
Usp11Q99K46 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.36■□□□□ 0.53
Usp11Q99K46 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.36■□□□□ 0.53
Usp11Q99K46 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.36■□□□□ 0.53
Usp11Q99K46 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Usp11Q99K46 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.36■□□□□ 0.53
Usp11Q99K46 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp11Q99K46 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Usp11Q99K46 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
Usp11Q99K46 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Usp11Q99K46 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Usp11Q99K46 Gm27275-201ENSMUST00000184318 272 ntBASIC18.35■□□□□ 0.53
Usp11Q99K46 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.35■□□□□ 0.53
Usp11Q99K46 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.35■□□□□ 0.53
Usp11Q99K46 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.35■□□□□ 0.53
Usp11Q99K46 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp11Q99K46 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.34■□□□□ 0.53
Usp11Q99K46 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Usp11Q99K46 Gm20760-201ENSMUST00000179197 648 ntBASIC18.34■□□□□ 0.53
Usp11Q99K46 Trmt13-210ENSMUST00000198454 880 ntBASIC18.34■□□□□ 0.53
Usp11Q99K46 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
Usp11Q99K46 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp11Q99K46 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp11Q99K46 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp11Q99K46 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Usp11Q99K46 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.33■□□□□ 0.52
Usp11Q99K46 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp11Q99K46 Zfp783-201ENSMUST00000095946 670 ntBASIC18.33■□□□□ 0.52
Usp11Q99K46 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Usp11Q99K46 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp11Q99K46 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp11Q99K46 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp11Q99K46 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Usp11Q99K46 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Usp11Q99K46 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Usp11Q99K46 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.32■□□□□ 0.52
Usp11Q99K46 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Gm11249-201ENSMUST00000117071 859 ntBASIC18.32■□□□□ 0.52
Usp11Q99K46 Gm11927-201ENSMUST00000118472 759 ntBASIC18.32■□□□□ 0.52
Usp11Q99K46 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Usp11Q99K46 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.32■□□□□ 0.52
Usp11Q99K46 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.32■□□□□ 0.52
Usp11Q99K46 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.32■□□□□ 0.52
Usp11Q99K46 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.32■□□□□ 0.52
Usp11Q99K46 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp11Q99K46 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms