Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Gm13146-201ENSMUST00000118508 780 ntBASIC17.56■□□□□ 0.4
Cdk9Q99J95 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk9Q99J95 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Gm9988-201ENSMUST00000069786 435 ntBASIC17.55■□□□□ 0.4
Cdk9Q99J95 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk9Q99J95 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Cdk9Q99J95 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Gm13534-201ENSMUST00000121169 513 ntBASIC17.54■□□□□ 0.4
Cdk9Q99J95 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Reep4-203ENSMUST00000226563 1444 ntBASIC17.54■□□□□ 0.4
Cdk9Q99J95 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk9Q99J95 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Cdk9Q99J95 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
Cdk9Q99J95 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Gm22325-201ENSMUST00000158904 308 ntBASIC17.52■□□□□ 0.4
Cdk9Q99J95 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdk9Q99J95 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC17.52■□□□□ 0.39
Cdk9Q99J95 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdk9Q99J95 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Cdk9Q99J95 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdk9Q99J95 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.52■□□□□ 0.39
Cdk9Q99J95 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.52■□□□□ 0.39
Cdk9Q99J95 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdk9Q99J95 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdk9Q99J95 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cdk9Q99J95 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdk9Q99J95 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.51■□□□□ 0.39
Cdk9Q99J95 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdk9Q99J95 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms