Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ushbp1Q8R370 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Mir6349-201ENSMUST00000184059 97 ntBASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Mir8112-201ENSMUST00000184382 131 ntBASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Ushbp1Q8R370 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ushbp1Q8R370 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Ushbp1Q8R370 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ushbp1Q8R370 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Gm10654-201ENSMUST00000098653 1633 ntBASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Ushbp1Q8R370 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.5■□□□□ 0.71
Ushbp1Q8R370 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Ushbp1Q8R370 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Ushbp1Q8R370 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ushbp1Q8R370 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ushbp1Q8R370 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ushbp1Q8R370 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ushbp1Q8R370 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Ushbp1Q8R370 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ushbp1Q8R370 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ushbp1Q8R370 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Gm13401-201ENSMUST00000117074 291 ntBASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Gm15375-201ENSMUST00000119510 849 ntBASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ushbp1Q8R370 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms