Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Syne4Q8CII8 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Syne4Q8CII8 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Syne4Q8CII8 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Syne4Q8CII8 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Syne4Q8CII8 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.72■□□□□ 0.75
Syne4Q8CII8 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Syne4Q8CII8 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.71■□□□□ 0.75
Syne4Q8CII8 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC19.71■□□□□ 0.75
Syne4Q8CII8 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC19.71■□□□□ 0.75
Syne4Q8CII8 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.71■□□□□ 0.75
Syne4Q8CII8 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne4Q8CII8 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne4Q8CII8 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Syne4Q8CII8 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne4Q8CII8 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.7■□□□□ 0.74
Syne4Q8CII8 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Syne4Q8CII8 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Syne4Q8CII8 Gm5864-201ENSMUST00000202263 970 ntBASIC19.7■□□□□ 0.74
Syne4Q8CII8 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC19.7■□□□□ 0.74
Syne4Q8CII8 Notumos-201ENSMUST00000151998 2659 ntBASIC19.7■□□□□ 0.74
Syne4Q8CII8 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Syne4Q8CII8 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne4Q8CII8 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne4Q8CII8 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Golph3-205ENSMUST00000228671 2842 ntBASIC19.69■□□□□ 0.74
Syne4Q8CII8 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Syne4Q8CII8 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC19.69■□□□□ 0.74
Syne4Q8CII8 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.69■□□□□ 0.74
Syne4Q8CII8 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne4Q8CII8 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Syne4Q8CII8 AC154855.1-201ENSMUST00000227353 1458 ntBASIC19.68■□□□□ 0.74
Syne4Q8CII8 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne4Q8CII8 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne4Q8CII8 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne4Q8CII8 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne4Q8CII8 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne4Q8CII8 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne4Q8CII8 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Gm15794-201ENSMUST00000120182 631 ntBASIC19.67■□□□□ 0.74
Syne4Q8CII8 Gm5867-201ENSMUST00000063197 592 ntBASIC19.67■□□□□ 0.74
Syne4Q8CII8 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne4Q8CII8 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC19.67■□□□□ 0.74
Syne4Q8CII8 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne4Q8CII8 Gm27459-201ENSMUST00000184860 107 ntBASIC19.66■□□□□ 0.74
Syne4Q8CII8 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne4Q8CII8 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.66■□□□□ 0.74
Syne4Q8CII8 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne4Q8CII8 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne4Q8CII8 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne4Q8CII8 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Syne4Q8CII8 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms