Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Sh3rf3Q8C120 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf3Q8C120 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf3Q8C120 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Sh3rf3Q8C120 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf3Q8C120 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.15■□□□□ 0.5
Sh3rf3Q8C120 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf3Q8C120 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf3Q8C120 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf3Q8C120 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.14■□□□□ 0.5
Sh3rf3Q8C120 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Gm6576-201ENSMUST00000169678 883 ntBASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf3Q8C120 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Gm10418-201ENSMUST00000100943 576 ntBASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Mir8112-201ENSMUST00000184382 131 ntBASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf3Q8C120 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Gm11643-201ENSMUST00000119578 864 ntBASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf3Q8C120 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 Gm20760-201ENSMUST00000179197 648 ntBASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 Gm43183-201ENSMUST00000200632 547 ntBASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf3Q8C120 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Gm13168-201ENSMUST00000121771 632 ntBASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf3Q8C120 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf3Q8C120 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms