Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim47Q8C0E3 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim47Q8C0E3 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim47Q8C0E3 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim47Q8C0E3 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.32■□□□□ 0.68
Trim47Q8C0E3 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Trim47Q8C0E3 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim47Q8C0E3 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
Trim47Q8C0E3 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim47Q8C0E3 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim47Q8C0E3 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim47Q8C0E3 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.3■□□□□ 0.68
Trim47Q8C0E3 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Gm4217-201ENSMUST00000182243 1002 ntBASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Gm7889-201ENSMUST00000185591 958 ntBASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim47Q8C0E3 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Gm27463-201ENSMUST00000183569 57 ntBASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trim47Q8C0E3 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Gm13836-201ENSMUST00000121159 501 ntBASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Gm7791-201ENSMUST00000219066 539 ntBASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Trim47Q8C0E3 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.27■□□□□ 0.67
Trim47Q8C0E3 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim47Q8C0E3 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim47Q8C0E3 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.27■□□□□ 0.67
Trim47Q8C0E3 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim47Q8C0E3 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trim47Q8C0E3 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim47Q8C0E3 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim47Q8C0E3 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.26■□□□□ 0.67
Trim47Q8C0E3 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC19.26■□□□□ 0.67
Trim47Q8C0E3 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim47Q8C0E3 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.26■□□□□ 0.67
Trim47Q8C0E3 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms