Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Gm7791-201ENSMUST00000219066 539 ntBASIC20.56■□□□□ 0.88
Trim56Q80VI1 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim56Q80VI1 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim56Q80VI1 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim56Q80VI1 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Gm4217-201ENSMUST00000182243 1002 ntBASIC20.55■□□□□ 0.88
Trim56Q80VI1 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim56Q80VI1 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC20.55■□□□□ 0.88
Trim56Q80VI1 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim56Q80VI1 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
Trim56Q80VI1 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
Trim56Q80VI1 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Trim56Q80VI1 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Gm8668-201ENSMUST00000120559 1447 ntBASIC20.53■□□□□ 0.88
Trim56Q80VI1 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim56Q80VI1 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim56Q80VI1 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Trim56Q80VI1 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trim56Q80VI1 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trim56Q80VI1 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC20.51■□□□□ 0.87
Trim56Q80VI1 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Gm7889-201ENSMUST00000185591 958 ntBASIC20.51■□□□□ 0.87
Trim56Q80VI1 Gm37025-201ENSMUST00000195159 829 ntBASIC20.51■□□□□ 0.87
Trim56Q80VI1 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim56Q80VI1 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms