Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Usp49Q6P9L4 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC19.52■□□□□ 0.72
Usp49Q6P9L4 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Usp49Q6P9L4 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp49Q6P9L4 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp49Q6P9L4 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp49Q6P9L4 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
Usp49Q6P9L4 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp49Q6P9L4 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp49Q6P9L4 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
Usp49Q6P9L4 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Usp49Q6P9L4 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Usp49Q6P9L4 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Gm16499-203ENSMUST00000204633 2177 ntBASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp49Q6P9L4 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC19.5■□□□□ 0.71
Usp49Q6P9L4 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp49Q6P9L4 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Gm12382-201ENSMUST00000122005 922 ntBASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp49Q6P9L4 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Gm10517-202ENSMUST00000192970 758 ntBASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp49Q6P9L4 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp49Q6P9L4 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms