Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col7a1Q63870 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Col7a1Q63870 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC14.51□□□□□ -0.09
Col7a1Q63870 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Col7a1Q63870 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Col7a1Q63870 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Col7a1Q63870 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.51□□□□□ -0.09
Col7a1Q63870 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col7a1Q63870 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC14.5□□□□□ -0.09
Col7a1Q63870 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Col7a1Q63870 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC14.5□□□□□ -0.09
Col7a1Q63870 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.5□□□□□ -0.09
Col7a1Q63870 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Col7a1Q63870 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Col7a1Q63870 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col7a1Q63870 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
Col7a1Q63870 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC14.49□□□□□ -0.09
Col7a1Q63870 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Col7a1Q63870 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC14.49□□□□□ -0.09
Col7a1Q63870 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC14.49□□□□□ -0.09
Col7a1Q63870 Gm15173-201ENSMUST00000122049 433 ntBASIC14.49□□□□□ -0.09
Col7a1Q63870 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Mir3113-201ENSMUST00000175478 76 ntBASIC14.49□□□□□ -0.09
Col7a1Q63870 Gm27000-201ENSMUST00000182943 842 ntBASIC14.49□□□□□ -0.09
Col7a1Q63870 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.49□□□□□ -0.09
Col7a1Q63870 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col7a1Q63870 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC14.49□□□□□ -0.09
Col7a1Q63870 Gm14701-201ENSMUST00000117156 348 ntBASIC14.48□□□□□ -0.09
Col7a1Q63870 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.48□□□□□ -0.09
Col7a1Q63870 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC14.48□□□□□ -0.09
Col7a1Q63870 Gm37025-201ENSMUST00000195159 829 ntBASIC14.48□□□□□ -0.09
Col7a1Q63870 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC14.48□□□□□ -0.09
Col7a1Q63870 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Col7a1Q63870 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Col7a1Q63870 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Col7a1Q63870 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC14.48□□□□□ -0.09
Col7a1Q63870 Gm45683-201ENSMUST00000210825 1247 ntBASIC14.48□□□□□ -0.09
Col7a1Q63870 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC14.48□□□□□ -0.09
Col7a1Q63870 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col7a1Q63870 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Col7a1Q63870 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Col7a1Q63870 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.47□□□□□ -0.09
Col7a1Q63870 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.47□□□□□ -0.09
Col7a1Q63870 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col7a1Q63870 AA543401-201ENSMUST00000164248 1269 ntBASIC14.47□□□□□ -0.09
Col7a1Q63870 Gm37171-201ENSMUST00000192636 1185 ntBASIC14.47□□□□□ -0.09
Col7a1Q63870 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms