Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CtcfQ61164 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC19.16■□□□□ 0.66
CtcfQ61164 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CtcfQ61164 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.16■□□□□ 0.66
CtcfQ61164 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.16■□□□□ 0.66
CtcfQ61164 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.16■□□□□ 0.66
CtcfQ61164 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
CtcfQ61164 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CtcfQ61164 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CtcfQ61164 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.16■□□□□ 0.66
CtcfQ61164 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CtcfQ61164 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.16■□□□□ 0.66
CtcfQ61164 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.16■□□□□ 0.66
CtcfQ61164 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CtcfQ61164 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CtcfQ61164 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CtcfQ61164 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CtcfQ61164 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.15■□□□□ 0.66
CtcfQ61164 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CtcfQ61164 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC19.15■□□□□ 0.66
CtcfQ61164 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CtcfQ61164 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CtcfQ61164 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CtcfQ61164 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.15■□□□□ 0.66
CtcfQ61164 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CtcfQ61164 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CtcfQ61164 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CtcfQ61164 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CtcfQ61164 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CtcfQ61164 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Gm2399-201ENSMUST00000104944 225 ntBASIC19.14■□□□□ 0.65
CtcfQ61164 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.14■□□□□ 0.65
CtcfQ61164 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CtcfQ61164 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CtcfQ61164 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CtcfQ61164 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CtcfQ61164 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.14■□□□□ 0.65
CtcfQ61164 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CtcfQ61164 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CtcfQ61164 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CtcfQ61164 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.13■□□□□ 0.65
CtcfQ61164 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.13■□□□□ 0.65
CtcfQ61164 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.13■□□□□ 0.65
CtcfQ61164 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.13■□□□□ 0.65
CtcfQ61164 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
CtcfQ61164 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CtcfQ61164 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CtcfQ61164 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.12■□□□□ 0.65
CtcfQ61164 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Gm8495-201ENSMUST00000188740 694 ntBASIC19.12■□□□□ 0.65
CtcfQ61164 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC19.12■□□□□ 0.65
CtcfQ61164 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CtcfQ61164 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CtcfQ61164 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CtcfQ61164 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CtcfQ61164 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC19.12■□□□□ 0.65
CtcfQ61164 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.12■□□□□ 0.65
CtcfQ61164 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CtcfQ61164 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CtcfQ61164 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms