Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Nr1h4Q60641 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nr1h4Q60641 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nr1h4Q60641 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nr1h4Q60641 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nr1h4Q60641 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nr1h4Q60641 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nr1h4Q60641 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nr1h4Q60641 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nr1h4Q60641 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC16.62■□□□□ 0.25
Nr1h4Q60641 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nr1h4Q60641 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.61■□□□□ 0.25
Nr1h4Q60641 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC16.61■□□□□ 0.25
Nr1h4Q60641 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1h4Q60641 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Nr1h4Q60641 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.6■□□□□ 0.25
Nr1h4Q60641 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC16.6■□□□□ 0.25
Nr1h4Q60641 Gm10418-201ENSMUST00000100943 576 ntBASIC16.6■□□□□ 0.25
Nr1h4Q60641 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Gm10033-202ENSMUST00000211874 928 ntBASIC16.6■□□□□ 0.25
Nr1h4Q60641 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.6■□□□□ 0.25
Nr1h4Q60641 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Haglr-201ENSMUST00000100000 2085 ntBASIC16.6■□□□□ 0.25
Nr1h4Q60641 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nr1h4Q60641 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.59■□□□□ 0.25
Nr1h4Q60641 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC16.59■□□□□ 0.25
Nr1h4Q60641 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Gm38285-201ENSMUST00000192928 922 ntBASIC16.59■□□□□ 0.25
Nr1h4Q60641 AC140264.2-202ENSMUST00000218746 817 ntBASIC16.59■□□□□ 0.25
Nr1h4Q60641 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Nr1h4Q60641 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1h4Q60641 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1h4Q60641 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1h4Q60641 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1h4Q60641 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1h4Q60641 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Nr1h4Q60641 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1h4Q60641 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms