Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Usp28Q5I043 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Usp28Q5I043 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp28Q5I043 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp28Q5I043 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp28Q5I043 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp28Q5I043 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC19.81■□□□□ 0.76
Usp28Q5I043 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp28Q5I043 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp28Q5I043 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp28Q5I043 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.8■□□□□ 0.76
Usp28Q5I043 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp28Q5I043 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Usp28Q5I043 Gm11643-201ENSMUST00000119578 864 ntBASIC19.8■□□□□ 0.76
Usp28Q5I043 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Usp28Q5I043 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Usp28Q5I043 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.8■□□□□ 0.76
Usp28Q5I043 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp28Q5I043 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Usp28Q5I043 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC19.79■□□□□ 0.76
Usp28Q5I043 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.79■□□□□ 0.76
Usp28Q5I043 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.79■□□□□ 0.76
Usp28Q5I043 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.79■□□□□ 0.76
Usp28Q5I043 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp28Q5I043 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
Usp28Q5I043 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Usp28Q5I043 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Usp28Q5I043 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Usp28Q5I043 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Usp28Q5I043 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp28Q5I043 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Usp28Q5I043 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Usp28Q5I043 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp28Q5I043 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Usp28Q5I043 Gm6576-201ENSMUST00000169678 883 ntBASIC19.77■□□□□ 0.76
Usp28Q5I043 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp28Q5I043 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp28Q5I043 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.77■□□□□ 0.76
Usp28Q5I043 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp28Q5I043 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp28Q5I043 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp28Q5I043 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp28Q5I043 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Usp28Q5I043 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp28Q5I043 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp28Q5I043 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usp28Q5I043 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usp28Q5I043 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.76■□□□□ 0.75
Usp28Q5I043 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Usp28Q5I043 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp28Q5I043 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Usp28Q5I043 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp28Q5I043 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp28Q5I043 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp28Q5I043 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp28Q5I043 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp28Q5I043 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.75■□□□□ 0.75
Usp28Q5I043 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.75■□□□□ 0.75
Usp28Q5I043 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Usp28Q5I043 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.75■□□□□ 0.75
Usp28Q5I043 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC19.75■□□□□ 0.75
Usp28Q5I043 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp28Q5I043 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC19.75■□□□□ 0.75
Usp28Q5I043 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp28Q5I043 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp28Q5I043 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Gm16401-202ENSMUST00000197463 2074 ntBASIC19.74■□□□□ 0.75
Usp28Q5I043 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Usp28Q5I043 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Usp28Q5I043 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.74■□□□□ 0.75
Usp28Q5I043 Gm27275-201ENSMUST00000184318 272 ntBASIC19.74■□□□□ 0.75
Usp28Q5I043 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.74■□□□□ 0.75
Usp28Q5I043 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms