Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Gm13181-201ENSMUST00000120117 1069 ntBASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Upf3bQ3ULL6 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3bQ3ULL6 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Gm715-201ENSMUST00000117865 831 ntBASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Upf3bQ3ULL6 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Upf3bQ3ULL6 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3bQ3ULL6 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Upf3bQ3ULL6 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Upf3bQ3ULL6 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
Upf3bQ3ULL6 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.58■□□□□ 0.56
Upf3bQ3ULL6 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3bQ3ULL6 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3bQ3ULL6 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3bQ3ULL6 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3bQ3ULL6 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3bQ3ULL6 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3bQ3ULL6 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms