Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm43073-201ENSMUST00000198200 1189 ntBASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Ddb1Q3U1J4 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Gm9449-201ENSMUST00000207265 1011 ntBASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ddb1Q3U1J4 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Ddb1Q3U1J4 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ddb1Q3U1J4 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Gm15372-201ENSMUST00000120729 834 ntBASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Zkscan4-202ENSMUST00000225845 1506 ntBASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ddb1Q3U1J4 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Gm2651-201ENSMUST00000203560 838 ntBASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ddb1Q3U1J4 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms