Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sox9Q04887 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.96■□□□□ 0.47
Sox9Q04887 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
Sox9Q04887 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox9Q04887 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.96■□□□□ 0.47
Sox9Q04887 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sox9Q04887 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sox9Q04887 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.96■□□□□ 0.47
Sox9Q04887 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.96■□□□□ 0.47
Sox9Q04887 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Sox9Q04887 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox9Q04887 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox9Q04887 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox9Q04887 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.95■□□□□ 0.46
Sox9Q04887 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sox9Q04887 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.95■□□□□ 0.46
Sox9Q04887 Gm2213-201ENSMUST00000197485 688 ntBASIC17.95■□□□□ 0.46
Sox9Q04887 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.95■□□□□ 0.46
Sox9Q04887 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC17.95■□□□□ 0.46
Sox9Q04887 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.95■□□□□ 0.46
Sox9Q04887 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Sox9Q04887 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox9Q04887 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox9Q04887 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Sox9Q04887 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox9Q04887 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox9Q04887 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox9Q04887 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sox9Q04887 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sox9Q04887 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox9Q04887 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox9Q04887 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC17.94■□□□□ 0.46
Sox9Q04887 Gm43545-201ENSMUST00000196765 2779 ntBASIC17.94■□□□□ 0.46
Sox9Q04887 Gm11594-201ENSMUST00000122313 162 ntBASIC17.94■□□□□ 0.46
Sox9Q04887 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC17.94■□□□□ 0.46
Sox9Q04887 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox9Q04887 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Sox9Q04887 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.94■□□□□ 0.46
Sox9Q04887 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Sox9Q04887 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox9Q04887 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
Sox9Q04887 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sox9Q04887 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.93■□□□□ 0.46
Sox9Q04887 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.93■□□□□ 0.46
Sox9Q04887 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox9Q04887 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Sox9Q04887 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox9Q04887 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox9Q04887 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.92■□□□□ 0.46
Sox9Q04887 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox9Q04887 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
Sox9Q04887 Gm7063-201ENSMUST00000186840 981 ntBASIC17.92■□□□□ 0.46
Sox9Q04887 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.92■□□□□ 0.46
Sox9Q04887 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.92■□□□□ 0.46
Sox9Q04887 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox9Q04887 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox9Q04887 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox9Q04887 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox9Q04887 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Sox9Q04887 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Sox9Q04887 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC17.91■□□□□ 0.46
Sox9Q04887 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.91■□□□□ 0.46
Sox9Q04887 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 AC154621.1-201ENSMUST00000226155 1119 ntBASIC17.91■□□□□ 0.46
Sox9Q04887 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.91■□□□□ 0.46
Sox9Q04887 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC17.91■□□□□ 0.46
Sox9Q04887 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.91■□□□□ 0.46
Sox9Q04887 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Sox9Q04887 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox9Q04887 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox9Q04887 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Sox9Q04887 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Sox9Q04887 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.9■□□□□ 0.46
Sox9Q04887 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox9Q04887 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Sox9Q04887 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox9Q04887 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Sox9Q04887 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Sox9Q04887 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Sox9Q04887 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Sox9Q04887 Gm8000-201ENSMUST00000188378 592 ntBASIC17.9■□□□□ 0.46
Sox9Q04887 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms