Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Col6a1Q04857 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Col6a1Q04857 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Col6a1Q04857 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.2■□□□□ 0.66
Col6a1Q04857 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a1Q04857 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Col6a1Q04857 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Col6a1Q04857 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a1Q04857 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a1Q04857 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC19.2■□□□□ 0.66
Col6a1Q04857 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.2■□□□□ 0.66
Col6a1Q04857 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a1Q04857 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a1Q04857 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a1Q04857 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC19.19■□□□□ 0.66
Col6a1Q04857 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.19■□□□□ 0.66
Col6a1Q04857 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Col6a1Q04857 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Col6a1Q04857 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.19■□□□□ 0.66
Col6a1Q04857 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 Gm6443-201ENSMUST00000203599 874 ntBASIC19.19■□□□□ 0.66
Col6a1Q04857 Gm18115-201ENSMUST00000221209 621 ntBASIC19.19■□□□□ 0.66
Col6a1Q04857 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC19.19■□□□□ 0.66
Col6a1Q04857 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Col6a1Q04857 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a1Q04857 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Col6a1Q04857 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a1Q04857 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a1Q04857 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.18■□□□□ 0.66
Col6a1Q04857 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a1Q04857 Mir3081-201ENSMUST00000175305 84 ntBASIC19.18■□□□□ 0.66
Col6a1Q04857 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.18■□□□□ 0.66
Col6a1Q04857 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.18■□□□□ 0.66
Col6a1Q04857 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a1Q04857 Gm7791-201ENSMUST00000219066 539 ntBASIC19.18■□□□□ 0.66
Col6a1Q04857 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a1Q04857 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.18■□□□□ 0.66
Col6a1Q04857 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a1Q04857 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Col6a1Q04857 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC19.18■□□□□ 0.66
Col6a1Q04857 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a1Q04857 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a1Q04857 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Col6a1Q04857 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a1Q04857 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
Col6a1Q04857 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.17■□□□□ 0.66
Col6a1Q04857 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
Col6a1Q04857 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.17■□□□□ 0.66
Col6a1Q04857 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Col6a1Q04857 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Col6a1Q04857 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.17■□□□□ 0.66
Col6a1Q04857 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a1Q04857 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.16■□□□□ 0.66
Col6a1Q04857 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Col6a1Q04857 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
Col6a1Q04857 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.16■□□□□ 0.66
Col6a1Q04857 Gm24589-201ENSMUST00000116692 94 ntBASIC19.16■□□□□ 0.66
Col6a1Q04857 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC19.16■□□□□ 0.66
Col6a1Q04857 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC19.16■□□□□ 0.66
Col6a1Q04857 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Col6a1Q04857 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col6a1Q04857 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col6a1Q04857 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Col6a1Q04857 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a1Q04857 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a1Q04857 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a1Q04857 Gm7638-201ENSMUST00000121348 967 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms