Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm11950-201ENSMUST00000121615 838 ntBASIC14.83□□□□□ -0.04
Col8a1Q00780 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
Col8a1Q00780 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
Col8a1Q00780 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
Col8a1Q00780 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
Col8a1Q00780 Mir1668-201ENSMUST00000184114 107 ntBASIC14.83□□□□□ -0.04
Col8a1Q00780 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC14.83□□□□□ -0.04
Col8a1Q00780 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC14.83□□□□□ -0.04
Col8a1Q00780 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC14.83□□□□□ -0.04
Col8a1Q00780 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC14.83□□□□□ -0.04
Col8a1Q00780 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col8a1Q00780 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Col8a1Q00780 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Col8a1Q00780 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
Col8a1Q00780 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC14.82□□□□□ -0.04
Col8a1Q00780 Gm28659-201ENSMUST00000188013 759 ntBASIC14.82□□□□□ -0.04
Col8a1Q00780 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC14.82□□□□□ -0.04
Col8a1Q00780 Gm7213-201ENSMUST00000215977 950 ntBASIC14.82□□□□□ -0.04
Col8a1Q00780 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC14.82□□□□□ -0.04
Col8a1Q00780 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
Col8a1Q00780 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col8a1Q00780 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Col8a1Q00780 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Col8a1Q00780 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Gm11355-201ENSMUST00000121120 306 ntBASIC14.81□□□□□ -0.04
Col8a1Q00780 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Gm27742-201ENSMUST00000184667 60 ntBASIC14.81□□□□□ -0.04
Col8a1Q00780 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC14.81□□□□□ -0.04
Col8a1Q00780 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC14.81□□□□□ -0.04
Col8a1Q00780 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col8a1Q00780 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC14.8□□□□□ -0.04
Col8a1Q00780 Gm27357-201ENSMUST00000183754 135 ntBASIC14.8□□□□□ -0.04
Col8a1Q00780 Gm37805-201ENSMUST00000192612 1094 ntBASIC14.8□□□□□ -0.04
Col8a1Q00780 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Col8a1Q00780 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC14.8□□□□□ -0.04
Col8a1Q00780 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col8a1Q00780 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col8a1Q00780 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Col8a1Q00780 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC14.79□□□□□ -0.04
Col8a1Q00780 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC14.79□□□□□ -0.04
Col8a1Q00780 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Golph3-205ENSMUST00000228671 2842 ntBASIC14.79□□□□□ -0.04
Col8a1Q00780 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms