Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 Gm13168-201ENSMUST00000121771 632 ntBASIC15.89■□□□□ 0.13
Cdh11P55288 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Cdh11P55288 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC15.89■□□□□ 0.13
Cdh11P55288 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC15.89■□□□□ 0.13
Cdh11P55288 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cdh11P55288 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
Cdh11P55288 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Cdh11P55288 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC15.88■□□□□ 0.13
Cdh11P55288 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC15.88■□□□□ 0.13
Cdh11P55288 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Cdh11P55288 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
Cdh11P55288 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC15.88■□□□□ 0.13
Cdh11P55288 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cdh11P55288 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Cdh11P55288 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
Cdh11P55288 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Cdh11P55288 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC15.87■□□□□ 0.13
Cdh11P55288 Cxcl14-202ENSMUST00000224801 1467 ntBASIC15.87■□□□□ 0.13
Cdh11P55288 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Gm44878-201ENSMUST00000205812 1295 ntBASIC15.87■□□□□ 0.13
Cdh11P55288 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Cdh11P55288 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Cdh11P55288 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC15.86■□□□□ 0.13
Cdh11P55288 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Cdh11P55288 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC15.86■□□□□ 0.13
Cdh11P55288 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 AC160393.1-201ENSMUST00000218378 1279 ntBASIC15.86■□□□□ 0.13
Cdh11P55288 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Cdh11P55288 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdh11P55288 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Cdh11P55288 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Cdh11P55288 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Gm27275-201ENSMUST00000184318 272 ntBASIC15.85■□□□□ 0.13
Cdh11P55288 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC15.85■□□□□ 0.13
Cdh11P55288 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC15.85■□□□□ 0.13
Cdh11P55288 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Cdh11P55288 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC15.85■□□□□ 0.13
Cdh11P55288 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Cdh11P55288 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdh11P55288 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC15.85■□□□□ 0.13
Cdh11P55288 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms