Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Rfx1P48377 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.84■□□□□ 0.93
Rfx1P48377 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Gm20628-201ENSMUST00000177363 3215 ntBASIC20.84■□□□□ 0.93
Rfx1P48377 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC20.84■□□□□ 0.93
Rfx1P48377 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Gm10493-201ENSMUST00000097270 612 ntBASIC20.84■□□□□ 0.93
Rfx1P48377 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rfx1P48377 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Rfx1P48377 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Rfx1P48377 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Rfx1P48377 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.83■□□□□ 0.93
Rfx1P48377 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rfx1P48377 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rfx1P48377 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Rfx1P48377 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rfx1P48377 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rfx1P48377 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rfx1P48377 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rfx1P48377 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rfx1P48377 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rfx1P48377 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.82■□□□□ 0.92
Rfx1P48377 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rfx1P48377 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rfx1P48377 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Rfx1P48377 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rfx1P48377 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC20.82■□□□□ 0.92
Rfx1P48377 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.82■□□□□ 0.92
Rfx1P48377 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rfx1P48377 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rfx1P48377 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
Rfx1P48377 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rfx1P48377 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.8■□□□□ 0.92
Rfx1P48377 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.8■□□□□ 0.92
Rfx1P48377 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Rfx1P48377 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Gm26596-201ENSMUST00000180464 2655 ntBASIC20.8■□□□□ 0.92
Rfx1P48377 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rfx1P48377 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Rfx1P48377 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Rfx1P48377 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.79■□□□□ 0.92
Rfx1P48377 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.79■□□□□ 0.92
Rfx1P48377 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.79■□□□□ 0.92
Rfx1P48377 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rfx1P48377 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rfx1P48377 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rfx1P48377 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rfx1P48377 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Rfx1P48377 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms