Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC14.35□□□□□ -0.11
Sdc1P18828 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC14.35□□□□□ -0.11
Sdc1P18828 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Sdc1P18828 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Sdc1P18828 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Sdc1P18828 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Sdc1P18828 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC14.34□□□□□ -0.11
Sdc1P18828 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC14.34□□□□□ -0.11
Sdc1P18828 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Sdc1P18828 Gm7417-201ENSMUST00000192950 473 ntBASIC14.34□□□□□ -0.11
Sdc1P18828 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC14.34□□□□□ -0.11
Sdc1P18828 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Sdc1P18828 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Sdc1P18828 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Sdc1P18828 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Sdc1P18828 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
Sdc1P18828 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC14.34□□□□□ -0.11
Sdc1P18828 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC14.34□□□□□ -0.11
Sdc1P18828 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sdc1P18828 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sdc1P18828 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sdc1P18828 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC14.33□□□□□ -0.11
Sdc1P18828 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Sdc1P18828 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Sdc1P18828 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Sdc1P18828 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sdc1P18828 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC14.33□□□□□ -0.12
Sdc1P18828 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Sdc1P18828 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sdc1P18828 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Sdc1P18828 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sdc1P18828 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Sdc1P18828 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Sdc1P18828 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC14.32□□□□□ -0.12
Sdc1P18828 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Sdc1P18828 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Sdc1P18828 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC14.32□□□□□ -0.12
Sdc1P18828 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Sdc1P18828 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Sdc1P18828 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Sdc1P18828 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sdc1P18828 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC14.31□□□□□ -0.12
Sdc1P18828 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC14.31□□□□□ -0.12
Sdc1P18828 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms