Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Col3a1P08121 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col3a1P08121 Gm11355-201ENSMUST00000121120 306 ntBASIC20.84■□□□□ 0.93
Col3a1P08121 Gm26039-201ENSMUST00000158152 144 ntBASIC20.84■□□□□ 0.93
Col3a1P08121 Ank2-226ENSMUST00000189368 339 ntBASIC20.84■□□□□ 0.93
Col3a1P08121 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col3a1P08121 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col3a1P08121 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Col3a1P08121 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col3a1P08121 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col3a1P08121 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col3a1P08121 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.84■□□□□ 0.93
Col3a1P08121 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Col3a1P08121 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col3a1P08121 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC20.84■□□□□ 0.93
Col3a1P08121 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col3a1P08121 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Col3a1P08121 Gm11860-201ENSMUST00000122346 1010 ntBASIC20.83■□□□□ 0.93
Col3a1P08121 Gm7284-201ENSMUST00000131667 944 ntBASIC20.83■□□□□ 0.93
Col3a1P08121 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col3a1P08121 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Col3a1P08121 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Col3a1P08121 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col3a1P08121 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Col3a1P08121 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col3a1P08121 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col3a1P08121 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col3a1P08121 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC20.83■□□□□ 0.92
Col3a1P08121 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col3a1P08121 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col3a1P08121 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col3a1P08121 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col3a1P08121 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
Col3a1P08121 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Col3a1P08121 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col3a1P08121 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col3a1P08121 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col3a1P08121 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col3a1P08121 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC20.82■□□□□ 0.92
Col3a1P08121 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Col3a1P08121 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col3a1P08121 Gm17808-201ENSMUST00000200859 894 ntBASIC20.81■□□□□ 0.92
Col3a1P08121 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col3a1P08121 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col3a1P08121 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col3a1P08121 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Col3a1P08121 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col3a1P08121 Gm9103-201ENSMUST00000119371 405 ntBASIC20.81■□□□□ 0.92
Col3a1P08121 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC20.81■□□□□ 0.92
Col3a1P08121 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC20.81■□□□□ 0.92
Col3a1P08121 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
Col3a1P08121 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col3a1P08121 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col3a1P08121 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col3a1P08121 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col3a1P08121 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col3a1P08121 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.8■□□□□ 0.92
Col3a1P08121 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC20.8■□□□□ 0.92
Col3a1P08121 Gm27000-201ENSMUST00000182943 842 ntBASIC20.8■□□□□ 0.92
Col3a1P08121 Gm37722-201ENSMUST00000193757 208 ntBASIC20.8■□□□□ 0.92
Col3a1P08121 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col3a1P08121 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
Col3a1P08121 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col3a1P08121 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Col3a1P08121 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
Col3a1P08121 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col3a1P08121 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col3a1P08121 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col3a1P08121 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col3a1P08121 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col3a1P08121 Gm14859-201ENSMUST00000117752 357 ntBASIC20.79■□□□□ 0.92
Col3a1P08121 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col3a1P08121 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC20.79■□□□□ 0.92
Col3a1P08121 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Col3a1P08121 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col3a1P08121 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
Col3a1P08121 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Col3a1P08121 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col3a1P08121 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col3a1P08121 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Col3a1P08121 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col3a1P08121 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Col3a1P08121 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col3a1P08121 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col3a1P08121 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Col3a1P08121 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
Col3a1P08121 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Col3a1P08121 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col3a1P08121 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col3a1P08121 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col3a1P08121 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col3a1P08121 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col3a1P08121 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col3a1P08121 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC20.77■□□□□ 0.92
Col3a1P08121 Gm11950-201ENSMUST00000121615 838 ntBASIC20.77■□□□□ 0.92
Col3a1P08121 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC20.77■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms