Protein–RNA interactions for Protein: P04224

H-2 class II histocompatibility antigen, E-K alpha chain, mousemouse

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P04224 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
P04224 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
P04224 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
P04224 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC15.33■□□□□ 0.04
P04224 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Gm6139-201ENSMUST00000079261 882 ntBASIC15.33■□□□□ 0.04
P04224 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
P04224 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Gm43338-201ENSMUST00000198617 2223 ntBASIC15.33■□□□□ 0.04
P04224 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
P04224 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
P04224 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
P04224 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
P04224 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
P04224 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
P04224 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC15.32■□□□□ 0.04
P04224 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
P04224 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
P04224 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
P04224 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC15.32■□□□□ 0.04
P04224 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
P04224 Dancr-204ENSMUST00000132389 2347 ntBASIC15.32■□□□□ 0.04
P04224 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
P04224 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
P04224 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC15.31■□□□□ 0.04
P04224 Gm43017-201ENSMUST00000198296 752 ntBASIC15.31■□□□□ 0.04
P04224 Gm45417-201ENSMUST00000209533 758 ntBASIC15.31■□□□□ 0.04
P04224 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
P04224 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
P04224 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC15.31■□□□□ 0.04
P04224 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
P04224 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
P04224 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Gm10167-201ENSMUST00000150411 1479 ntBASIC15.3■□□□□ 0.04
P04224 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Gm19094-201ENSMUST00000209791 1246 ntBASIC15.3■□□□□ 0.04
P04224 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
P04224 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
P04224 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
P04224 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
P04224 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
P04224 AC121961.1-201ENSMUST00000218594 1779 ntBASIC15.29■□□□□ 0.04
P04224 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
P04224 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
P04224 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC15.29■□□□□ 0.04
P04224 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
P04224 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC15.29■□□□□ 0.04
P04224 Gm14281-201ENSMUST00000121700 1294 ntBASIC15.29■□□□□ 0.04
P04224 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
P04224 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms