Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm26544-201ENSMUST00000181404 2763 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Zbbx-203ENSMUST00000107776 1978 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Capn13-201ENSMUST00000095208 2614 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Csde1-215ENSMUST00000199420 4185 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm44229-201ENSMUST00000203211 2487 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 BC018473-204ENSMUST00000156293 4753 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Atr-213ENSMUST00000215311 8102 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm17275-201ENSMUST00000181811 2550 ntTSL 5 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Tcrg-V6-201ENSMUST00000103555 403 ntAPPRIS ALT2 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Trav14d-3-dv8-201ENSMUST00000103608 456 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm22152-201ENSMUST00000116966 125 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm8916-201ENSMUST00000119732 949 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm15153-201ENSMUST00000119867 274 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm24675-201ENSMUST00000158757 259 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Sptssb-202ENSMUST00000171529 772 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 1110038B12Rik-201ENSMUST00000172501 579 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm37585-201ENSMUST00000195440 280 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm19418-201ENSMUST00000197436 580 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Igkv12-40-201ENSMUST00000199208 347 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm2623-201ENSMUST00000199229 286 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 AV026068-216ENSMUST00000223874 328 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 AC129541.1-201ENSMUST00000226940 523 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 AC165138.1-201ENSMUST00000226984 270 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Bglap3-201ENSMUST00000075523 717 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm22829-201ENSMUST00000083771 106 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Olfr1340-201ENSMUST00000094834 951 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Bglap2-201ENSMUST00000098956 471 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm13648-201ENSMUST00000138361 1536 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Dnase1l1-202ENSMUST00000075821 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm37527-201ENSMUST00000192406 3547 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 Slmap-201ENSMUST00000038522 4501 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Dtna-203ENSMUST00000220904 3860 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Serpina6-201ENSMUST00000044159 1605 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Awat1-201ENSMUST00000096361 1390 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gm26581-201ENSMUST00000181953 4479 ntTSL 2 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 9530026P05Rik-202ENSMUST00000181145 2968 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Gcnt1-201ENSMUST00000169897 4594 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 AC129085.3-201ENSMUST00000225686 1705 ntBASIC6.53□□□□□ -1.36
Rnf40Q3U319 AC155922.2-201ENSMUST00000220240 1458 ntTSL 5 BASIC6.53□□□□□ -1.36
Rnf40Q3U319 Ube2n-201ENSMUST00000099329 3867 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
Rnf40Q3U319 Uba1y-201ENSMUST00000115894 3981 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm45311-201ENSMUST00000211086 1330 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 A730091E23Rik-201ENSMUST00000221700 3825 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 4930568G15Rik-201ENSMUST00000193317 3218 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Vmn1r9-202ENSMUST00000227399 6778 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm12845-202ENSMUST00000204276 1431 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm33680-203ENSMUST00000219610 4117 ntTSL 3 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Vmn1r213-202ENSMUST00000227573 3515 ntAPPRIS ALT2 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm3512-202ENSMUST00000172431 1861 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 9330175M20Rik-201ENSMUST00000189867 2552 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 9830144P21Rik-202ENSMUST00000127525 3362 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Aspn-201ENSMUST00000021820 2310 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Rnu11-201ENSMUST00000104135 134 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Hnmt-202ENSMUST00000114497 994 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm11781-201ENSMUST00000118328 472 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Itpa-ps3-201ENSMUST00000119034 395 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm15112-201ENSMUST00000120152 860 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm11496-201ENSMUST00000128078 581 ntTSL 2 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm14319-201ENSMUST00000142937 703 ntTSL 2 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm23120-201ENSMUST00000157654 287 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm22206-201ENSMUST00000158612 116 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Mir1929-201ENSMUST00000158635 93 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm16353-201ENSMUST00000159458 1223 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Mdrl-201ENSMUST00000180483 1020 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm26585-201ENSMUST00000180890 630 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 2010103J01Rik-201ENSMUST00000192375 388 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm36382-201ENSMUST00000198892 541 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Olfr674-ps1-201ENSMUST00000209383 946 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm6009-201ENSMUST00000210848 280 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Tmem45b-204ENSMUST00000217007 783 ntTSL 2 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm31931-201ENSMUST00000219666 222 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm9237-201ENSMUST00000221499 548 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm34215-201ENSMUST00000221599 355 ntTSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 AC127242.3-201ENSMUST00000222009 580 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 AC165157.1-201ENSMUST00000222981 580 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 AC154808.1-201ENSMUST00000223156 730 ntTSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 CT030195.1-201ENSMUST00000223887 378 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 AC133598.2-201ENSMUST00000224302 624 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 AC154270.1-201ENSMUST00000227226 426 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm28044-201ENSMUST00000044819 551 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 4930578G10Rik-201ENSMUST00000068158 614 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm22628-201ENSMUST00000082988 107 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Sult2a8-203ENSMUST00000168252 2097 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Zc4h2-203ENSMUST00000120620 2156 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm43282-201ENSMUST00000201848 2157 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Mbnl1-207ENSMUST00000192607 4552 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Olfr736-205ENSMUST00000215263 2255 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Olfr629-203ENSMUST00000216300 2277 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Pramel4-203ENSMUST00000094520 2297 ntAPPRIS P2 TSL 2 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Sirpb1c-201ENSMUST00000050623 1499 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Ndufaf4-201ENSMUST00000029925 3632 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Rgs17-204ENSMUST00000131996 8107 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Ccdc146-202ENSMUST00000115245 3389 ntAPPRIS P2 TSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Pkn2-210ENSMUST00000174422 2904 ntTSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm44660-201ENSMUST00000207134 2465 ntBASIC6.52□□□□□ -1.37
Rnf40Q3U319 Herc2-203ENSMUST00000205303 14403 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Gm12043-201ENSMUST00000131570 2788 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Rnf40Q3U319 Olfr857-202ENSMUST00000212013 2306 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
Rnf40Q3U319 Tnfrsf26-202ENSMUST00000208124 3062 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Rnf40Q3U319 Cyp4a31-202ENSMUST00000030486 2509 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
Retrieved 100 of 76,532 protein–RNA pairs in 94 ms