Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Obox4-ps1-201ENSMUST00000184446 700 ntBASIC6.14□□□□□ -1.43
Ccdc88bQ4QRL3 Trav14d-1-202ENSMUST00000187138 340 ntAPPRIS ALT2 BASIC6.14□□□□□ -1.43
Ccdc88bQ4QRL3 Gm18529-201ENSMUST00000193025 1257 ntBASIC6.14□□□□□ -1.43
Ccdc88bQ4QRL3 Gm19366-201ENSMUST00000206996 156 ntBASIC6.14□□□□□ -1.43
Ccdc88bQ4QRL3 AV026068-237ENSMUST00000226075 572 ntBASIC6.14□□□□□ -1.43
Ccdc88bQ4QRL3 Txndc9-204ENSMUST00000193832 3472 ntTSL 2 BASIC6.14□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr388-ps1-201ENSMUST00000118336 2129 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
Ccdc88bQ4QRL3 Cd53-201ENSMUST00000038845 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Lpar4-201ENSMUST00000060576 4238 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Gm24048-201ENSMUST00000102411 106 ntBASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Gm23322-201ENSMUST00000104464 167 ntBASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Gm11233-201ENSMUST00000122357 634 ntBASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Gm28148-201ENSMUST00000186924 697 ntBASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Gm17777-201ENSMUST00000189740 1276 ntBASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 AC154598.1-201ENSMUST00000227079 347 ntBASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Gm30302-202ENSMUST00000220773 3511 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Gm28362-201ENSMUST00000189430 2420 ntBASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Gm43508-201ENSMUST00000197251 3783 ntBASIC6.13□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr970-202ENSMUST00000213975 1630 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Hsfy2-201ENSMUST00000062085 1392 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Tfpi-202ENSMUST00000090732 3576 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr65-203ENSMUST00000214300 2855 ntAPPRIS ALT1 TSL 5 BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Herc2-202ENSMUST00000164095 15261 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Ccr1-201ENSMUST00000026911 2833 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Gm13076-201ENSMUST00000118041 204 ntBASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Gm13752-201ENSMUST00000138195 491 ntTSL 5 BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Gm18342-201ENSMUST00000186987 694 ntBASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Gm44393-201ENSMUST00000197418 138 ntBASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Gm43155-201ENSMUST00000202661 494 ntBASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 AC153544.1-201ENSMUST00000217988 400 ntBASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 4930453C13Rik-201ENSMUST00000222376 765 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Gm25800-201ENSMUST00000082636 134 ntBASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr853-202ENSMUST00000213834 3888 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Zfp280c-203ENSMUST00000088898 4024 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Dnah6-201ENSMUST00000064948 12652 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr183-204ENSMUST00000214831 1906 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Gm40909-202ENSMUST00000223275 5564 ntTSL 5 BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr1322-202ENSMUST00000217355 3886 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Hnrnpr-207ENSMUST00000148843 21452 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Gm16005-201ENSMUST00000120515 269 ntBASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Gm15860-202ENSMUST00000137257 506 ntTSL 3 BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Gm44040-201ENSMUST00000203360 545 ntTSL 3 BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Gm44475-201ENSMUST00000204041 424 ntBASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Gm26571-203ENSMUST00000221865 555 ntTSL 2 BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 AC123705.4-201ENSMUST00000222411 493 ntTSL 3 BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr1138-202ENSMUST00000214573 1611 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Scn1a-203ENSMUST00000112366 8386 ntAPPRIS ALT1 TSL 5 BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Hrnr-202ENSMUST00000093774 11187 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Gm4788-202ENSMUST00000111986 2935 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr639-202ENSMUST00000215653 6570 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Ppm1k-201ENSMUST00000042766 5560 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Ros1-202ENSMUST00000218452 6960 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Gm25539-201ENSMUST00000116886 122 ntBASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Gm29327-201ENSMUST00000188229 388 ntTSL 5 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Gm5368-201ENSMUST00000189012 589 ntBASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 1700074A21Rik-201ENSMUST00000192404 346 ntBASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Gm43929-201ENSMUST00000203025 409 ntBASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Gm45327-201ENSMUST00000211612 565 ntBASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 AC150314.1-201ENSMUST00000214798 238 ntBASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Sprr2i-201ENSMUST00000047264 617 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Gm25630-201ENSMUST00000084000 162 ntBASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr262-201ENSMUST00000087818 939 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Gm10356-201ENSMUST00000097152 1258 ntBASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Spag17-204ENSMUST00000164539 7862 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Ank2-208ENSMUST00000182078 14305 ntAPPRIS P2 TSL 5 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Gm42481-201ENSMUST00000196822 2178 ntBASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Skint4-202ENSMUST00000106564 3997 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Skint4-204ENSMUST00000106566 3997 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Vmn1r201-203ENSMUST00000226965 4741 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr1043-204ENSMUST00000216028 1824 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Hhla1-201ENSMUST00000100584 2262 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Vmn2r35-201ENSMUST00000169683 2586 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Depdc1a-203ENSMUST00000120272 3323 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr1115-202ENSMUST00000213513 3604 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr1043-203ENSMUST00000213949 1778 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Drr1-202ENSMUST00000151575 2789 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Nlrp4c-201ENSMUST00000037728 3615 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Ccdc88bQ4QRL3 Ecm2-201ENSMUST00000051504 3596 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Gm11913-201ENSMUST00000119094 336 ntBASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Gemin6-ps-201ENSMUST00000120444 501 ntBASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr944-202ENSMUST00000213908 1257 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 AC158523.1-201ENSMUST00000221398 328 ntBASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr926-201ENSMUST00000078289 1051 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr294-201ENSMUST00000078588 1008 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Zfp595-203ENSMUST00000168892 4040 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Gm15356-201ENSMUST00000140669 2741 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Gm12586-201ENSMUST00000117328 1316 ntBASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Gm37792-201ENSMUST00000195761 3413 ntBASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Xcr1-201ENSMUST00000182350 4453 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr769-203ENSMUST00000216906 4325 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Olfr963-202ENSMUST00000215649 2203 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
Ccdc88bQ4QRL3 Vmn1r217-202ENSMUST00000227110 9888 ntAPPRIS P1 BASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Crisp2-201ENSMUST00000024724 1438 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Gm11971-201ENSMUST00000117715 288 ntBASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 8030453O22Rik-201ENSMUST00000128919 370 ntTSL 3 BASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Gm13874-201ENSMUST00000130680 809 ntTSL 5 BASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 2810403D21Rik-207ENSMUST00000152089 852 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Gm24059-201ENSMUST00000157493 312 ntBASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Gm2617-201ENSMUST00000185690 1066 ntBASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Smcp-202ENSMUST00000194965 744 ntAPPRIS P1 TSL 3 BASIC6.09□□□□□ -1.44
Retrieved 100 of 76,532 protein–RNA pairs in 97.2 ms