Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm38375-201ENSMUST00000194610 2227 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Fam122c-201ENSMUST00000114835 745 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm14835-201ENSMUST00000119039 315 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm12281-201ENSMUST00000119536 298 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm17014-201ENSMUST00000120765 168 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Vmn1r-ps116-201ENSMUST00000121544 292 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 1700061F12Rik-201ENSMUST00000132414 876 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm13794-201ENSMUST00000148637 468 ntTSL 3 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm23024-201ENSMUST00000158770 292 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm24225-201ENSMUST00000158825 98 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm10319-202ENSMUST00000159439 846 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Ear-ps9-201ENSMUST00000161963 460 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Vmn1r-ps9-201ENSMUST00000177047 358 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm23619-201ENSMUST00000178411 94 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Lipo1-202ENSMUST00000178735 1188 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm25474-201ENSMUST00000179052 94 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm22047-201ENSMUST00000179176 94 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm21638-201ENSMUST00000179473 836 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 4930519F16Rik-206ENSMUST00000183292 800 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Mir6541-201ENSMUST00000183649 110 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Mir7020-201ENSMUST00000183787 70 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm27201-201ENSMUST00000183818 416 ntTSL 3 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm20937-202ENSMUST00000189084 811 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm29201-201ENSMUST00000189120 431 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm20736-203ENSMUST00000190282 836 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm29552-201ENSMUST00000190548 660 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm42539-201ENSMUST00000197009 308 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Igkv4-56-201ENSMUST00000198436 349 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm44733-201ENSMUST00000208067 543 ntTSL 3 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Olfr512-202ENSMUST00000209620 1056 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 AC153505.2-201ENSMUST00000217741 277 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 4930556N09Rik-202ENSMUST00000219466 1015 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm40692-201ENSMUST00000220411 491 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm6049-201ENSMUST00000222369 458 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Rps4x-201ENSMUST00000033683 975 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Olfr807-201ENSMUST00000059038 997 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Olfr512-201ENSMUST00000074730 1056 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm23972-201ENSMUST00000083322 165 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm24763-201ENSMUST00000083688 190 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Olfr677-201ENSMUST00000098161 939 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Vmn2r-ps130-201ENSMUST00000175853 2568 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Vmn2r-ps129-201ENSMUST00000177509 2568 ntBASIC6.2□□□□□ -1.42
Trim56Q80VI1 Vmn1r9-202ENSMUST00000227399 6778 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Vmn1r27-203ENSMUST00000228530 3115 ntAPPRIS P2 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Hbp1-204ENSMUST00000175686 1315 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Ankrd34c-201ENSMUST00000060700 5457 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Fignl1-202ENSMUST00000109664 2807 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 A830019L24Rik-202ENSMUST00000198056 3165 ntTSL 3 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm14326-204ENSMUST00000178829 1665 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Fsbp-201ENSMUST00000180239 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Trim56Q80VI1 Gm44708-201ENSMUST00000205580 2237 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Iqca-207ENSMUST00000212394 2574 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Olfr1215-203ENSMUST00000216271 2608 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Mapk10-212ENSMUST00000170792 7203 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm5444-201ENSMUST00000065956 2468 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Tspan7-202ENSMUST00000115526 7067 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm42697-201ENSMUST00000198992 4092 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Olfr364-ps1-201ENSMUST00000104995 1766 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Esp34-201ENSMUST00000173055 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Esp34-202ENSMUST00000178654 1413 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Fam205a3-201ENSMUST00000178192 3927 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Fam205a2-202ENSMUST00000180201 3927 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Tet1-206ENSMUST00000174189 14369 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Vmn1r124-201ENSMUST00000105200 924 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm9733-201ENSMUST00000108361 618 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Arhgdib-202ENSMUST00000111891 828 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Hmgb1-ps2-201ENSMUST00000117548 636 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Hmgb1-ps3-201ENSMUST00000118415 636 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm14831-201ENSMUST00000120253 409 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm15387-201ENSMUST00000120421 648 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 n-R5s24-201ENSMUST00000122518 117 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm11967-201ENSMUST00000135132 480 ntTSL 2 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm22804-201ENSMUST00000158052 101 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Bhlhe40-202ENSMUST00000163617 476 ntTSL 2 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm20701-201ENSMUST00000176082 347 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm4076-201ENSMUST00000179230 965 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Hmgb1-ps9-201ENSMUST00000179479 645 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Ifi213-205ENSMUST00000180215 643 ntAPPRIS P2 TSL 3 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Mir6238-201ENSMUST00000184140 129 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm29341-201ENSMUST00000190179 370 ntTSL 5 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm28404-201ENSMUST00000190242 453 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm37164-201ENSMUST00000192809 637 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 7420461P10Rik-203ENSMUST00000193898 545 ntAPPRIS ALT2 TSL 3 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm5842-201ENSMUST00000195073 622 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Obox4-ps32-201ENSMUST00000196512 537 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm9317-201ENSMUST00000197055 862 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Igkv15-97-201ENSMUST00000197637 339 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm4321-201ENSMUST00000200520 442 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Rho-205ENSMUST00000203877 939 ntTSL 2 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm44278-201ENSMUST00000204082 312 ntTSL 2 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 AC123064.1-201ENSMUST00000218950 406 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm5457-201ENSMUST00000022260 333 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm2645-201ENSMUST00000223516 547 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 CT030704.1-201ENSMUST00000227521 699 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Olfr497-201ENSMUST00000076406 945 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm23514-201ENSMUST00000082827 130 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm24268-201ENSMUST00000082990 110 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Snora30-201ENSMUST00000083325 130 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Gm5518-201ENSMUST00000084171 648 ntBASIC6.19□□□□□ -1.42
Trim56Q80VI1 Fbxw15-201ENSMUST00000056745 1495 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
Retrieved 100 of 76,532 protein–RNA pairs in 89.5 ms