Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Nlrp2-201ENSMUST00000045022 3404 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm22750-201ENSMUST00000102076 103 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm13677-201ENSMUST00000120739 595 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm15949-201ENSMUST00000129485 126 ntTSL 3 BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm22219-201ENSMUST00000157562 319 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 2010005H15Rik-203ENSMUST00000187742 466 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm42926-201ENSMUST00000200496 697 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Vmn1r231-201ENSMUST00000061278 936 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 n-R5s182-201ENSMUST00000083889 107 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm5168-201ENSMUST00000089165 824 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm44542-201ENSMUST00000208677 4314 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Olfr843-203ENSMUST00000214267 7071 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Skint3-202ENSMUST00000170945 3843 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Olfr1180-203ENSMUST00000217320 2107 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Scn9a-206ENSMUST00000164384 7530 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Olfr599-202ENSMUST00000214329 2183 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Pramel6-202ENSMUST00000111572 1781 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm45322-201ENSMUST00000211642 1361 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Trav14d-3-dv8-201ENSMUST00000103608 456 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm25105-201ENSMUST00000122477 130 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm26746-201ENSMUST00000181722 487 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm9775-201ENSMUST00000189402 331 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Rhoay-ps1-201ENSMUST00000191243 581 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm37343-201ENSMUST00000192542 111 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Kap-202ENSMUST00000203168 464 ntAPPRIS ALT2 TSL 3 BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm18944-201ENSMUST00000207672 643 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Gm46138-201ENSMUST00000215294 426 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 AC125379.1-201ENSMUST00000221928 111 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Mir133a-2-201ENSMUST00000083526 104 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Mir101b-201ENSMUST00000083622 97 ntBASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Olfr677-201ENSMUST00000098161 939 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
Ccdc88bQ4QRL3 Wdr17-206ENSMUST00000144711 4720 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.4
Ccdc88bQ4QRL3 Dpp10-202ENSMUST00000112606 15297 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr113-201ENSMUST00000216181 1671 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr995-202ENSMUST00000216933 1706 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Gm31592-201ENSMUST00000217529 3471 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Gm22472-201ENSMUST00000104115 134 ntBASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Gm15060-201ENSMUST00000119550 948 ntBASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Gm12691-201ENSMUST00000120186 456 ntBASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Gm22840-201ENSMUST00000158444 136 ntBASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Gm20389-201ENSMUST00000174217 1006 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Mir7k-201ENSMUST00000184115 110 ntBASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Gm9712-201ENSMUST00000210842 311 ntBASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Ankrd31-201ENSMUST00000207464 5146 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Gabra3-202ENSMUST00000114554 1790 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
Ccdc88bQ4QRL3 Gm38374-201ENSMUST00000194417 2033 ntBASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Gm4631-202ENSMUST00000121393 4402 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Themis-202ENSMUST00000060409 2278 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Vmn2r86-201ENSMUST00000170257 3039 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Apob-202ENSMUST00000037811 13934 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Smarca2-220ENSMUST00000207054 2333 ntTSL 5 BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Gm44049-201ENSMUST00000204905 2984 ntBASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr1163-202ENSMUST00000215268 1611 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Gm14981-201ENSMUST00000117325 943 ntBASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Gm14861-201ENSMUST00000119451 455 ntBASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Gm24550-201ENSMUST00000158648 279 ntBASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Gm24949-201ENSMUST00000183609 215 ntBASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Klra6-201ENSMUST00000074056 1116 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Vmn1r8-201ENSMUST00000078186 1213 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr885-201ENSMUST00000081985 930 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr1098-201ENSMUST00000099872 948 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Cep290-201ENSMUST00000164751 8006 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
Ccdc88bQ4QRL3 Gm42486-201ENSMUST00000200369 3486 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 AC158921.1-201ENSMUST00000227861 3468 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Kctd12b-201ENSMUST00000039424 4795 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr397-202ENSMUST00000213134 4048 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm38065-201ENSMUST00000193147 3492 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 4930431P03Rik-202ENSMUST00000166127 4237 ntTSL 2 BASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm13831-201ENSMUST00000118764 302 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm14240-201ENSMUST00000120353 546 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm24976-201ENSMUST00000158972 135 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm22859-201ENSMUST00000174978 122 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm6680-201ENSMUST00000192789 950 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm45860-201ENSMUST00000212700 334 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm18594-201ENSMUST00000175733 1403 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Vmn2r67-201ENSMUST00000168730 2556 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm37498-201ENSMUST00000193524 4002 ntBASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Cnot7-203ENSMUST00000132032 2542 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm29114-201ENSMUST00000187100 2508 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Nfat5-202ENSMUST00000077440 12773 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
Ccdc88bQ4QRL3 Gm16440-201ENSMUST00000100900 1089 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Gm11939-201ENSMUST00000104931 300 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Gm24898-201ENSMUST00000158133 106 ntBASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Gm3043-201ENSMUST00000170639 821 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Gm44371-201ENSMUST00000204148 467 ntBASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 4930545L08Rik-201ENSMUST00000215688 566 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 AC153979.1-201ENSMUST00000219684 242 ntTSL 5 BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Lelp1-201ENSMUST00000029535 857 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr506-201ENSMUST00000077343 1008 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Gm25480-201ENSMUST00000083217 133 ntBASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Zfp808-201ENSMUST00000099449 2571 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 4932429P05Rik-201ENSMUST00000113958 3093 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr392-202ENSMUST00000144724 3904 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr1191-ps1-202ENSMUST00000217379 5933 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
Ccdc88bQ4QRL3 Nfib-202ENSMUST00000064770 8429 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
Ccdc88bQ4QRL3 Gm45540-201ENSMUST00000209271 3606 ntBASIC6.23□□□□□ -1.41
Ccdc88bQ4QRL3 Gm14435-202ENSMUST00000127687 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
Ccdc88bQ4QRL3 Gm12082-201ENSMUST00000138164 600 ntTSL 3 BASIC6.23□□□□□ -1.41
Ccdc88bQ4QRL3 Gm10057-201ENSMUST00000144098 984 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
Ccdc88bQ4QRL3 Olfr436-ps1-201ENSMUST00000203108 284 ntBASIC6.23□□□□□ -1.41
Retrieved 100 of 76,532 protein–RNA pairs in 116.6 ms