Protein–RNA interactions for Protein: Q9Z0H3

Smarcb1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, mousemouse

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcb1Q9Z0H3 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smarcb1Q9Z0H3 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smarcb1Q9Z0H3 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.12■□□□□ 0.49
Smarcb1Q9Z0H3 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smarcb1Q9Z0H3 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Gm22697-201ENSMUST00000175194 63 ntBASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Smarcb1Q9Z0H3 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smarcb1Q9Z0H3 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Smarcb1Q9Z0H3 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Smarcb1Q9Z0H3 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Smarcb1Q9Z0H3 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.08■□□□□ 0.49
Smarcb1Q9Z0H3 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Smarcb1Q9Z0H3 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Smarcb1Q9Z0H3 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.08■□□□□ 0.49
Smarcb1Q9Z0H3 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Smarcb1Q9Z0H3 Mir1668-201ENSMUST00000184114 107 ntBASIC18.08■□□□□ 0.48
Smarcb1Q9Z0H3 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.08■□□□□ 0.48
Smarcb1Q9Z0H3 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.08■□□□□ 0.48
Smarcb1Q9Z0H3 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.08■□□□□ 0.48
Smarcb1Q9Z0H3 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smarcb1Q9Z0H3 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Smarcb1Q9Z0H3 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smarcb1Q9Z0H3 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Smarcb1Q9Z0H3 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
Smarcb1Q9Z0H3 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Smarcb1Q9Z0H3 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smarcb1Q9Z0H3 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smarcb1Q9Z0H3 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Smarcb1Q9Z0H3 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smarcb1Q9Z0H3 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smarcb1Q9Z0H3 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smarcb1Q9Z0H3 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms