Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Gm27011-201ENSMUST00000182352 972 ntBASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Prpf40aQ9R1C7 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Gm13168-201ENSMUST00000121771 632 ntBASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Mir2861-201ENSMUST00000175539 82 ntBASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 AC108858.1-201ENSMUST00000228461 1498 ntBASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.19■□□□□ 0.66
Prpf40aQ9R1C7 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Gm10418-201ENSMUST00000100943 576 ntBASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Prpf40aQ9R1C7 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Idnk-204ENSMUST00000226010 1898 ntBASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Prpf40aQ9R1C7 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19.16■□□□□ 0.66
Prpf40aQ9R1C7 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Prpf40aQ9R1C7 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Prpf40aQ9R1C7 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Prpf40aQ9R1C7 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Prpf40aQ9R1C7 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Prpf40aQ9R1C7 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Prpf40aQ9R1C7 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Prpf40aQ9R1C7 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Prpf40aQ9R1C7 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Prpf40aQ9R1C7 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms