Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col4a4Q9QZR9 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Col4a4Q9QZR9 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col4a4Q9QZR9 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col4a4Q9QZR9 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.58■□□□□ 0.41
Col4a4Q9QZR9 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.58■□□□□ 0.41
Col4a4Q9QZR9 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Col4a4Q9QZR9 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col4a4Q9QZR9 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.58■□□□□ 0.41
Col4a4Q9QZR9 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col4a4Q9QZR9 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Col4a4Q9QZR9 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col4a4Q9QZR9 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col4a4Q9QZR9 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col4a4Q9QZR9 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Mir8112-201ENSMUST00000184382 131 ntBASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col4a4Q9QZR9 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.56■□□□□ 0.4
Col4a4Q9QZR9 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col4a4Q9QZR9 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC17.56■□□□□ 0.4
Col4a4Q9QZR9 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col4a4Q9QZR9 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col4a4Q9QZR9 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC17.56■□□□□ 0.4
Col4a4Q9QZR9 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col4a4Q9QZR9 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col4a4Q9QZR9 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.56■□□□□ 0.4
Col4a4Q9QZR9 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Rprl3-201ENSMUST00000157400 290 ntBASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Gm27867-201ENSMUST00000184778 125 ntBASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Gm5264-201ENSMUST00000190584 848 ntBASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Gm43575-201ENSMUST00000196420 516 ntBASIC17.55■□□□□ 0.4
Col4a4Q9QZR9 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Gm6296-201ENSMUST00000222599 943 ntBASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col4a4Q9QZR9 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Gm42670-201ENSMUST00000201816 1292 ntBASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Gm6277-202ENSMUST00000224036 2779 ntBASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col4a4Q9QZR9 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col4a4Q9QZR9 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col4a4Q9QZR9 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Col4a4Q9QZR9 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Col4a4Q9QZR9 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col4a4Q9QZR9 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col4a4Q9QZR9 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col4a4Q9QZR9 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms