Protein–RNA interactions for Protein: Q9QXD8

Limd1, LIM domain-containing protein 1, mousemouse

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limd1Q9QXD8 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limd1Q9QXD8 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limd1Q9QXD8 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Gm25016-201ENSMUST00000158399 131 ntBASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Gm27389-201ENSMUST00000183622 195 ntBASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Gm7213-201ENSMUST00000215977 950 ntBASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.25■□□□□ 0.67
Limd1Q9QXD8 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Mir1668-201ENSMUST00000184114 107 ntBASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limd1Q9QXD8 Grk6-206ENSMUST00000224995 2971 ntBASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.23■□□□□ 0.67
Limd1Q9QXD8 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 AC154471.1-201ENSMUST00000224418 436 ntBASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.22■□□□□ 0.67
Limd1Q9QXD8 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Limd1Q9QXD8 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Gm14859-201ENSMUST00000117752 357 ntBASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Gm17661-201ENSMUST00000170317 270 ntBASIC19.2■□□□□ 0.66
Limd1Q9QXD8 Ank2-226ENSMUST00000189368 339 ntBASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms