Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ube3bQ9ES34 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ube3bQ9ES34 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ube3bQ9ES34 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.8■□□□□ 0.92
Ube3bQ9ES34 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Gm18959-201ENSMUST00000208954 655 ntBASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
Ube3bQ9ES34 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ube3bQ9ES34 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Gm45058-201ENSMUST00000205810 766 ntBASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ube3bQ9ES34 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ube3bQ9ES34 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ube3bQ9ES34 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Gm8969-201ENSMUST00000199694 526 ntBASIC20.76■□□□□ 0.91
Ube3bQ9ES34 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Ube3bQ9ES34 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 AC125311.2-201ENSMUST00000227477 1940 ntBASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Gm7977-201ENSMUST00000193787 748 ntBASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.75■□□□□ 0.91
Ube3bQ9ES34 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ube3bQ9ES34 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ube3bQ9ES34 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms