Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Vps28Q9D1C8 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Vps28Q9D1C8 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Vps28Q9D1C8 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Vps28Q9D1C8 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Vps28Q9D1C8 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Vps28Q9D1C8 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Gm10517-202ENSMUST00000192970 758 ntBASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.89■□□□□ 0.45
Vps28Q9D1C8 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Gm13401-201ENSMUST00000117074 291 ntBASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 AC156016.1-201ENSMUST00000227190 1035 ntBASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps28Q9D1C8 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps28Q9D1C8 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps28Q9D1C8 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.87■□□□□ 0.45
Vps28Q9D1C8 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps28Q9D1C8 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps28Q9D1C8 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Vps28Q9D1C8 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Timm23-208ENSMUST00000226683 750 ntBASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Gm5417-201ENSMUST00000079706 384 ntBASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Vps28Q9D1C8 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms