Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Smc1aQ9CU62 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Smc1aQ9CU62 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Smc1aQ9CU62 Gm29994-201ENSMUST00000195495 1193 ntBASIC19.51■□□□□ 0.71
Smc1aQ9CU62 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smc1aQ9CU62 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smc1aQ9CU62 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smc1aQ9CU62 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smc1aQ9CU62 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Smc1aQ9CU62 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Mir1199-201ENSMUST00000117015 119 ntBASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Smc1aQ9CU62 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Gm37055-201ENSMUST00000191866 133 ntBASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Smc1aQ9CU62 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Smc1aQ9CU62 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Gm15565-201ENSMUST00000118890 427 ntBASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smc1aQ9CU62 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Smc1aQ9CU62 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smc1aQ9CU62 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smc1aQ9CU62 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Smc1aQ9CU62 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Smc1aQ9CU62 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Smc1aQ9CU62 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smc1aQ9CU62 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smc1aQ9CU62 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.46■□□□□ 0.71
Smc1aQ9CU62 Gm38308-201ENSMUST00000194934 1809 ntBASIC19.46■□□□□ 0.71
Smc1aQ9CU62 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms